View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11933_low_7 (Length: 328)
Name: NF11933_low_7
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_low_7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 52854865 - 52854547
Alignment:
| Q |
10 |
gatggacatcatttttattggattggttgatggaaggccctggtggattattggaaactaacccgtcaacttcaccagagcacatgttcattgcatcgga |
109 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52854865 |
gatgtacatcatttttattggattggttgattgaaggccctggtggattattggaaactaacccatcaacttcaccagagcacatgttcattgcatcgga |
52854766 |
T |
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| Q |
110 |
tcaaaagcgggctagtgtgagctactcatcaactatggacatttcaatcataaaagaagttttctccatagtcatttctgctgccaaggtgaactgatct |
209 |
Q |
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| T |
52854765 |
tcaaaagcgggctagtgtgagctactcatcaactatggacatttcaatcataaaagaagttttctctatagtcatttctgctgctgaggtgaactgatct |
52854666 |
T |
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| Q |
210 |
tagttgtcaaaccaatactagacactagtttctagttatcctaattttttctcggtcccttgtcaaaaacagattttgggaagacaagatgatgctatta |
309 |
Q |
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| T |
52854665 |
tagttctcaaaccaatactagacactagtttctagttatcctaattttttctcggtcccttgtcaaaaacagattttgggaagacaagatgatgctatta |
52854566 |
T |
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| Q |
310 |
tcaaaagagtatttgagtc |
328 |
Q |
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| T |
52854565 |
tcaaaagagtatttgagtc |
52854547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 48485347 - 48485025
Alignment:
| Q |
10 |
gatggacatcatttttattggattggttgatggaaggccctggtggattattggaaactaacccgtcaacttcaccagagcacatgttcattgcatcgga |
109 |
Q |
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|||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |
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| T |
48485347 |
gatgtacattatttttgttggattggttgatcaaaggccctggtggattattggaaactaacccatcaacttcaccagagcacatgttcattgcaccaga |
48485248 |
T |
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| Q |
110 |
tcaaaagcgggctagtgtgagctactcatcaactatggacatttcaatcataaaagaagttttctccatagtcatttctgctgccaaggtgaactgatct |
209 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
48485247 |
tcaaaagcaagctagtgtgagctactcatcaaccatggacatttcaatcataaaagaagttttctctatagtcgtttctgctgctgaggtgaactgatct |
48485148 |
T |
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| Q |
210 |
tagttgtcaaaccaatactagacactagtttctagttatcctaattttttctcggtccc-----ttgtcaaaaacagattttgggaagacaagatgatgc |
304 |
Q |
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||||| |||||||||||||||| || |||||||||||| ||| |||| ||| |||| | ||||||||||||| ||||||||| ||| |||||||| |
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| T |
48485147 |
tagttctcaaaccaatactagataccggtttctagttat-ctatttttatcttggtcactgagtttgtcaaaaacaggttttgggaaaacatgatgatgc |
48485049 |
T |
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| Q |
305 |
tattatcaaaagagtatttgagtc |
328 |
Q |
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|||||||||||||||| ||||||| |
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| T |
48485048 |
tattatcaaaagagtaattgagtc |
48485025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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