View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11934_high_2 (Length: 380)
Name: NF11934_high_2
Description: NF11934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11934_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 3810483 - 3810851
Alignment:
| Q |
1 |
tgaatattcatgtgtacaatccgataaaaaattttatactctacaaacatgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcct |
100 |
Q |
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| T |
3810483 |
tgaatattcatgtgtacaatccgataaaaaaatttatactctacaaacatgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcct |
3810582 |
T |
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| Q |
101 |
cacaagaagaaagatatgctatataaccaagatgggatacctactcaattaagttgtgattctgagctgattcaagaagtcacagattatcttcaaagtt |
200 |
Q |
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| T |
3810583 |
cacaagaagaaagatatgctatataaccaagatgggatacctactcaattaagttgtgattctgaactgattcaagaagtcacatattatcttcaaagtt |
3810682 |
T |
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| Q |
201 |
ttaatgcatcattagcatgattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcacc-nnnnnnnnncctagtttcgaactttatagagc |
299 |
Q |
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| T |
3810683 |
ttaatgcatcattagcatgattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcaccttttttttttcctagtttcgaactttatagagc |
3810782 |
T |
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| Q |
300 |
tagtttgtcatttttaagggattttgttgttcttaggatttaatccttgctactttcattattaatgat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810783 |
tagtttgtcatttttaagggattttgttgttcttaggatttaatccttgctactttcattattaatgat |
3810851 |
T |
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