View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11934_high_3 (Length: 273)
Name: NF11934_high_3
Description: NF11934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11934_high_3 |
 | |
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| [»] chr3 (24 HSPs) |
| |
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| [»] chr4 (2 HSPs) |
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|
| [»] scaffold0067 (1 HSPs) |
| | |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 28513563 - 28513309
Alignment:
| Q |
19 |
gagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28513563 |
gagattctaagactaagaagaatggaggggggatggagaaatatgattcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactt |
28513464 |
T |
|
| Q |
119 |
tgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28513463 |
tgagatgcatttcacaactacaatgcctcattgacaccaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaactcgaagg |
28513364 |
T |
|
| Q |
219 |
aatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28513363 |
aatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
28513309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 28492586 - 28492328
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
28492586 |
agcagaggttcttggactaagaaggatggaggggggatggagaaatatgatgcctgagattgttcctatggatcatggtatgaatgatctagtcaagctt |
28492487 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||| | || |
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|
| T |
28492486 |
agtttgagtagtatttcacaactacaatgcctcattgacactaaacatactgaatctctagtatcaaaagtattctccaagttggttgtactagagctcg |
28492387 |
T |
|
| Q |
215 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28492386 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
28492328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 28472545 - 28472287
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28472545 |
agcagaggttcttagactaagaaggatggaggggggatggagaaatatgatgcctgagattgttcctatggaccatggtatgaatgatctagtcgagctt |
28472446 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||| | || |
|
|
| T |
28472445 |
agtttgagtagtatttcacaactacaatgcctcattgacactaaacatactgaatctctagtatcaaaagtattctccaagttggttgtactagagctcg |
28472346 |
T |
|
| Q |
215 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28472345 |
aaggaatggataatttggaagaattgttcagcggtcctctttcctttgactctctgaac |
28472287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 27909679 - 27909937
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| || | |||||||||||||| |||||||||||||||||||| || ||||| || ||||| || | |||||||||||||||||| |||||| |
|
|
| T |
27909679 |
agcagaggttattagactaagaagaatcgaggggggatggagaaatatcatacctgagatgattcctttgaaacatggtatgaatgatctagttgagctt |
27909778 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
||||||| |||||||||| |||| ||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
27909779 |
gaattgagatccatttcacaattacagtgccttattgacactaagcatgtcatctctcaagtatcaaaagtcttctccaagttggttgtactagagctcg |
27909878 |
T |
|
| Q |
215 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27909879 |
aaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaac |
27909937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 28079285 - 28079543
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| ||||| || |||| || ||||| ||||||||||| || ||||| |||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
28079285 |
agcagaggttcttagacttggaggaatcgaaggggggtggagaaatatcatacctgatattgttccaatggatcatggtatgaatgatctagttgagctt |
28079384 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||| || | || |||||||| |||||||||||||||||||||| ||||||| | | | |
|
|
| T |
28079385 |
gaattgagatccatttcacaattacagtgcctcattgacactaagcacactgagtctcaagtgtcaaaagtcttctccaagttggttgtactaaagctca |
28079484 |
T |
|
| Q |
215 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28079485 |
aaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaac |
28079543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 11408677 - 11408933
Alignment:
| Q |
17 |
cagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttac |
116 |
Q |
| |
|
||||| |||| |||||| ||||||| | ||||| |||||||||||| || |||||||| |||||| | ||| ||||||||||||||||| |||||| |
|
|
| T |
11408677 |
cagaggttcttagactaggaagaatcgtgggggaatggagaaatatcatacctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttca |
11408776 |
T |
|
| Q |
117 |
tttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaa |
216 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||| |||| || || |||||||||||||||||||| |||||||| ||||||| | | ||| |
|
|
| T |
11408777 |
tttaagatgcatttcacaactaaaatgcctcattgacactatgcataccggatatcaagtatcaaaagtcttctgcaagttggttgtactaaagcttgaa |
11408876 |
T |
|
| Q |
217 |
ggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
11408877 |
ggaatggataatttggaagaattgttcaatggctctctttcctttgactctctgaac |
11408933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 27962749 - 27963007
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27962749 |
agcagagtttcttggactaagaagaatggaggggggatggagaaatatcatacctgagattgttcctatggagcatggtatgaatgatctagtcgagctt |
27962848 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
| ||| ||| || ||||||| ||| ||||||||||||| ||| ||| | |||||||||||| ||||||||||||||||||||| || |||||| | |
|
|
| T |
27962849 |
tcattgggatccaattcacaattacgttgcctcattgacagtaagcattttgaatctcaagtaacaaaagtcttctccaagttggttggcctagaa--ct |
27962946 |
T |
|
| Q |
215 |
aaggaa--tggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||| | || |||||||||||||||||||| |||||| | |||||||||||| ||||| |
|
|
| T |
27962947 |
taggaacctagaaaatttggaagaattgttcaatggtcctttgtcctttgactctttgaac |
27963007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 28129846 - 28130088
Alignment:
| Q |
30 |
actaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatt |
129 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||| || || ||||| |||||||| |||||| |||||||||||| |||| |||||| |||| ||| |||| |
|
|
| T |
28129846 |
actaagaagaatcgagggggaatggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatt |
28129945 |
T |
|
| Q |
130 |
tcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaac--ccgaaggaatggataa |
227 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || | ||||||||||| |||||||||||||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
28129946 |
tcacaattacagtgcctcattgacactaagcacactgaatctcaagtgtcaaaagtcttctccaagttggttgtactagaactttggaaccaa--gataa |
28130043 |
T |
|
| Q |
228 |
tttggaagaattgttcaaaggtcctctttcctttgactctctgaa |
272 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28130044 |
tttggaagaattgttcaatggtcctctttcctttgactctctgaa |
28130088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 28177932 - 28178166
Alignment:
| Q |
30 |
actaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatt |
129 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| || | ||||| ||||||||| ||||| |||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
28177932 |
actaggaagaatcgagggggggtggagaaacatcgtacctgagattgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatt |
28178031 |
T |
|
| Q |
130 |
tcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaaggaatggataatt |
229 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||| | | | ||||||||||||||| |
|
|
| T |
28178032 |
tcacaattacagtgcctcattgacactaat---------tctccagtttcaaaagtcttctccaagttggttgtactaaagctcaaaggaatggataatt |
28178122 |
T |
|
| Q |
230 |
tggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
| |||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
28178123 |
tagaagaattgttcaatggtcctgtttcctttgactctctgaac |
28178166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 27464593 - 27464339
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||| || || ||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27464593 |
agcagaggttcttagactaacaagaatggaggggggatggagaaacatcatacctgagattgttcctatggatcatggtatgaatgatctagtcgagctt |
27464494 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
| ||||| || ||||||||| | || ||||||||||||||| | |||| || |||||| | |||| |||||||||||||||| ||||||||| | |
|
|
| T |
27464493 |
aatttgatatccatttcacagttgcactgcctcattgacactcagcatactgattctcaatttccaaatgtcttctccaagttggttgtactaga--tct |
27464396 |
T |
|
| Q |
215 |
aaggaa--tggataatttggaagaattgttcaaaggtcctctttcctttgactctct |
269 |
Q |
| |
|
|||| | || |||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
27464395 |
ttggaacctagaaaatttggaagaattgttcaatggtcctgtttcctttgactctct |
27464339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 28143759 - 28144017
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||| ||||| ||| || || ||||| |||||||| |||||| |||||||||||| |||| |||||| |
|
|
| T |
28143759 |
agcagaggttcttagactaagaagaatcgagggggaatggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagctt |
28143858 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaac--c |
212 |
Q |
| |
|
|||| ||| |||||||||| |||| ||||||||||| ||||| || | ||||||||||| |||||||||||||||||||||| ||||||| ||| |
|
|
| T |
28143859 |
cgtttgggatccatttcacaattacagtgcctcattgatactaagcacactgaatctcaagtgtcaaaagtcttctccaagttggttgtactaaaacttt |
28143958 |
T |
|
| Q |
213 |
cgaaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28143959 |
ggaaccaa--cataatttggaagaattgttcaatggtcctctttcctttgactctctgaac |
28144017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 273
Target Start/End: Original strand, 27998493 - 27998717
Alignment:
| Q |
37 |
agaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaac |
136 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||| || ||||||||| | |||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
27998493 |
agaatggaggggggagggagaaatatcatacctgagatgattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaat |
27998592 |
T |
|
| Q |
137 |
tacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaaggaa--tggataatttggaa |
234 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||||| ||| |||||| | |||| | |||||||||||| |
|
|
| T |
27998593 |
tacaatgcctcattgacactaagcatactg------------gaaaagtcttctccaagttggttgtgctagaa--ctttggaacctagataatttggaa |
27998678 |
T |
|
| Q |
235 |
gaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
27998679 |
gaattatgcaatggtcctctttcctttgactctctgaac |
27998717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 17749544 - 17749305
Alignment:
| Q |
30 |
actaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatt |
129 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||| |||||||| || || |||||||||||| |||| |||||| || || ||| |
|
|
| T |
17749544 |
actaagaagaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatt |
17749445 |
T |
|
| Q |
130 |
tcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaac-ccgaaggaatggataat |
228 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| | ||||||||| |||| |||||||||| ||||| ||||||||| | | ||| | || ||| |
|
|
| T |
17749444 |
tcacaactgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggagg-ctagaaaat |
17749346 |
T |
|
| Q |
229 |
ttggaagaattgttcaaaggtcctctttcctttgactctct |
269 |
Q |
| |
|
||| ||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
17749345 |
ttgaaagaattgttcaatggccctctttcttttgactctct |
17749305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 19050864 - 19050625
Alignment:
| Q |
30 |
actaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatt |
129 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||| |||||||| || || |||||||||||| |||| |||||| || || ||| |
|
|
| T |
19050864 |
actaagaagaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatt |
19050765 |
T |
|
| Q |
130 |
tcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaac-ccgaaggaatggataat |
228 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| | ||||||||| |||| |||||||||| ||||| ||||||||| | | ||| | || ||| |
|
|
| T |
19050764 |
tcacaactgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggagg-ctagaaaat |
19050666 |
T |
|
| Q |
229 |
ttggaagaattgttcaaaggtcctctttcctttgactctct |
269 |
Q |
| |
|
||| ||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
19050665 |
ttgaaagaattgttcaatggccctctttcttttgactctct |
19050625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 239
Target Start/End: Complemental strand, 18081418 - 18081227
Alignment:
| Q |
48 |
gggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctc |
147 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||| ||| ||||||||||||||| | |||||| ||||| || |||||||||||| | |||| |
|
|
| T |
18081418 |
gggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctc |
18081319 |
T |
|
| Q |
148 |
attgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaaggaatggataatttggaagaatt |
239 |
Q |
| |
|
|| ||| | ||||||| || ||||||||| ||| |||||||||||||||| ||||||| | | || | |||||| |||||||||||||| |
|
|
| T |
18081318 |
atatacattgaacatattgattctcaagtaccaactgtcttctccaagttggttgtactacatcttgaggaaatggaaaatttggaagaatt |
18081227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 26117429 - 26117270
Alignment:
| Q |
48 |
gggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctc |
147 |
Q |
| |
|
|||||||| |||| | ||||| || ||||||||||| ||| ||||||||||||||| | |||||| |||| || |||||||||||||| ||||| |
|
|
| T |
26117429 |
gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgcctt |
26117330 |
T |
|
| Q |
148 |
attgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtacta |
207 |
Q |
| |
|
| |||||||||||||| | ||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
26117329 |
gtagacactaaacatattaattctcaagtaccaattgttttctccaagttggttgtacta |
26117270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 28047509 - 28047556
Alignment:
| Q |
226 |
aatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
28047509 |
aatttggaagaattgtgcaatggtcctctttcctttgactctctgaac |
28047556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 27401465 - 27401382
Alignment:
| Q |
129 |
ttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaa---agtcttctccaagttggctgtactaga |
209 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||| || ||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
27401465 |
ttcagaactacagtgcctcatagacactaaacatattgattctcaagtaccaaatgttgtcttctccaagttggttgtactaga |
27401382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 26145433 - 26145274
Alignment:
| Q |
48 |
gggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctc |
147 |
Q |
| |
|
|||||| |||||| | ||||| || || |||||||| ||| ||||||||||||||| | |||||| | ||||| |||||||||||||| ||||| |
|
|
| T |
26145433 |
gggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgccta |
26145334 |
T |
|
| Q |
148 |
attgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtacta |
207 |
Q |
| |
|
| |||||||||||||| | ||||||||| ||| || ||||| ||||||| ||||||| |
|
|
| T |
26145333 |
gtagacactaaacatattaattctcaagtaccaattgttttctctaagttggttgtacta |
26145274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 28047312 - 28047418
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| ||||| ||| |||| || || | ||||||||||| || ||||| ||||||||| ||||| |||||||||| |||||||| ||||| |
|
|
| T |
28047312 |
agcagaggttcttagacttagaggaattgaaaggtggtggagaaatatcatacctgatattgttcctttggatcatggtatgaataatctagtcaagctt |
28047411 |
T |
|
| Q |
115 |
actttga |
121 |
Q |
| |
|
| ||||| |
|
|
| T |
28047412 |
aatttga |
28047418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 26239693 - 26239534
Alignment:
| Q |
48 |
gggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctc |
147 |
Q |
| |
|
|||||||| |||| | ||||| || ||||||||||| ||| ||||||||||||||| | ||||| | ||| | |||||||||||||| | ||| |
|
|
| T |
26239693 |
gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtacctt |
26239594 |
T |
|
| Q |
148 |
attgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtacta |
207 |
Q |
| |
|
| |||||||||||||| | ||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
26239593 |
gtagacactaaacatattaattctcaagtaccaattgttttctccaagttggttgtacta |
26239534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 27343891 - 27343948
Alignment:
| Q |
48 |
gggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatcta |
105 |
Q |
| |
|
||||||||||||| | ||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
27343891 |
gggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatcta |
27343948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 27952159 - 27952272
Alignment:
| Q |
124 |
tgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaaggaatgg |
223 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||| || | ||||| | |||| |||| |||||||||| ||| ||| ||| || |||||| |
|
|
| T |
27952159 |
tgcatttcacaacttcagttcctcattgacactaagcatacagattttcaagaaccaaatttcttgtccaagttggttgttctaaaactagatagaatgg |
27952258 |
T |
|
| Q |
224 |
ataatttggaagaa |
237 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
27952259 |
aaaatttggaagaa |
27952272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 26624560 - 26624648
Alignment:
| Q |
179 |
caaaagtcttctccaagttggctgtactagaacccgaaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactct |
267 |
Q |
| |
|
|||| ||||| |||||||||| | ||||| |||| ||| ||||||| ||||||||||| | |||| ||||| |||||||||||||| |
|
|
| T |
26624560 |
caaatgtcttgtccaagttggttatactaaaaccggaaagaatggaagatttggaagaactattcagcggtcccatttcctttgactct |
26624648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 8694916 - 8694659
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
8694916 |
agcagaggttcttagactaagaagaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt |
8694817 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
||| ||||||||||||||||||||||||||| | |||||||| ||||| || ||||| ||||||| |||||||||||||| | |||||||| | | |
|
|
| T |
8694816 |
catttaagatgcatttcacaactacaatgcctcttagacactaagcatattgattctcatgtatcaattgtcttctccaagttagttgtactagttctca |
8694717 |
T |
|
| Q |
215 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaa |
272 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
8694716 |
aaggaatggataatttggaagaattgtgcaatggtcctctttcctttgactctctgaa |
8694659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 26027436 - 26027182
Alignment:
| Q |
15 |
agcagagattctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagctt |
114 |
Q |
| |
|
|||||| ||||| ||||||| ||| || ||||| || ||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
26027436 |
agcagaaattcttagactaacaaggattgagggagggtggagaaatatcatgcctgagattgttcatatggatcatggtatgaatgatctagtcgagctt |
26027337 |
T |
|
| Q |
115 |
actttgagatgcatttcacaactacaatgcctcattgacactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccg |
214 |
Q |
| |
|
||||||||| |||||||||| |||| | ||||||| ||||||| | || ||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
26027336 |
tctttgagatccatttcacaattacagtacctcattaacactaagcctactgaatctcaagtatcaaaagtcttctccaagttgattgtactagatcttt |
26027237 |
T |
|
| Q |
215 |
aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctct |
269 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26027236 |
ctaacctagaaaatttggaagaattgttcaatggtcctctttcctttgactctct |
26027182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 273
Target Start/End: Complemental strand, 9330454 - 9330233
Alignment:
| Q |
52 |
tggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctcattg |
151 |
Q |
| |
|
|||||||| || || ||||| ||||||||| ||||| |||||||||||||| | |||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
9330454 |
tggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattg |
9330355 |
T |
|
| Q |
152 |
acactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaaggaatggataatttggaagaattgttcaaaggtcc |
251 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | | | | | || |||||||||||||||||||| ||||| |
|
|
| T |
9330354 |
acactacgcatactgaatctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcc |
9330255 |
T |
|
| Q |
252 |
tctttcctttgactctctgaac |
273 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
9330254 |
tctttcctttgactctttgaac |
9330233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 273
Target Start/End: Complemental strand, 9384237 - 9384016
Alignment:
| Q |
52 |
tggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctcattg |
151 |
Q |
| |
|
|||||||| || || ||||| ||||||||| ||||| |||||||||||||| | |||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
9384237 |
tggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattg |
9384138 |
T |
|
| Q |
152 |
acactaaacatatcgaatctcaagtatcaaaagtcttctccaagttggctgtactagaacccgaaggaatggataatttggaagaattgttcaaaggtcc |
251 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | | | | | || |||||||||||||||||||| ||||| |
|
|
| T |
9384137 |
acactacgcatactgaatctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcc |
9384038 |
T |
|
| Q |
252 |
tctttcctttgactctctgaac |
273 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
9384037 |
tctttcctttgactctttgaac |
9384016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 23845 - 23959
Alignment:
| Q |
23 |
ttctaagactaagaagaatggaggggggatggagaaatatgatgcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgag |
122 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||||| | || || | |||||| |||||||| |||||||| ||| |||| || |||| |||||| |
|
|
| T |
23845 |
ttcttagactaagaagaatcgagacgggatggagaaatctcataccccagattgtttctatggatcaaggtatgaaagatatagttgaacttagtttgag |
23944 |
T |
|
| Q |
123 |
atgcatttcacaact |
137 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23945 |
ttgcatttcacaact |
23959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 4454 - 4365
Alignment:
| Q |
184 |
gtcttctccaagttggctgtactagaacccgaaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | | |||| | |||||||||||||| | ||| ||||| | | |||||||||| ||||| |
|
|
| T |
4454 |
gtcttctccaagttggttgtactagaactcaaggaaatgaagaatttggaagaattatgcaatggtcccatcttctttgactctatgaac |
4365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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