View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11934_low_1 (Length: 419)
Name: NF11934_low_1
Description: NF11934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11934_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 37119919 - 37119534
Alignment:
| Q |
19 |
ccgaaaacttcaatgacttcactcctttcgggttgcatggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgcagtttcaac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37119919 |
ccgaaaacttcaatgacttcactcctttcgggttgcatggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgctgtttcaac |
37119820 |
T |
|
| Q |
119 |
catggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactagcagcaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37119819 |
catggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactaggagcaaca |
37119720 |
T |
|
| Q |
219 |
ctttgtcttatgcagaattacaaagaacttgatactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119719 |
ctttgtcttatgcagaattacaaagaacttgatactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcat |
37119620 |
T |
|
| Q |
319 |
taggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtcaagctcgttatttaacacacattgcgcgtactcac |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
37119619 |
taggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtcaagctcgttacttaacacacattgcacgtactcac |
37119534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 37111664 - 37111279
Alignment:
| Q |
19 |
ccgaaaacttcaatgacttcactcctttcgggttgcatggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgcagtttcaac |
118 |
Q |
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|||||||||||||||||||||||||||||||| | || || ||||||| | |||| ||||| ||||||||||||||| ||||||||||||| |||||||| |
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| T |
37111664 |
ccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaatgcttccgctgtacttttctttgcttatgttggctttgatgctgtttcaac |
37111565 |
T |
|
| Q |
119 |
catggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactagcagcaaca |
218 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
37111564 |
catggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaacaataatttattgcttactggcagcaaca |
37111465 |
T |
|
| Q |
219 |
ctttgtcttatgcagaattacaaagaacttgatactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcat |
318 |
Q |
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|| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111464 |
ctgtgtcttatgcagaattacaaagaactaaatgttgatgctcctttctctgttgcttttagtgctgttggaatggattgggctaagtacattgtttcat |
37111365 |
T |
|
| Q |
319 |
taggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtcaagctcgttatttaacacacattgcgcgtactcac |
404 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
37111364 |
taggcgctttaaaaggaatgacaacggttttgttggttggtgctgttggtcaagctcgttatttaactcacattgcacgtactcac |
37111279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 72 - 404
Target Start/End: Original strand, 37136387 - 37136719
Alignment:
| Q |
72 |
tcggctgttcttttctttgcttatattggctttgatgcagtttcaaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttg |
171 |
Q |
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||||||||||||||||||||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| || | |
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| T |
37136387 |
tcggctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtag |
37136486 |
T |
|
| Q |
172 |
gatcaatgacgattacaacagcaatatattgcttactagcagcaacactttgtcttatgcagaattacaaagaacttgatactgatgctcctttctcagt |
271 |
Q |
| |
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|||||||| |||| || |||||||||| ||||||| ||||||| || ||||||||||| |||||| | ||||| |||| || || || || |
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| T |
37136487 |
gatcaatggtaattatcactttcatatattgctcactagcaacaacactatgccttatgcagaactacaaaacaattgatgtcaatgcaccattttcggt |
37136586 |
T |
|
| Q |
272 |
tgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtcaa |
371 |
Q |
| |
|
||| |||||| |||||||| || |||||||| ||||||||| |||| || || ||||| |||||||| || ||||||||||||| || || ||| |
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| T |
37136587 |
tgcatttagttctgttggatggggatgggctaaatacattgttgcattgggagcattgaagggaatgacgactgttttgttggttaatgttgtcggtgcc |
37136686 |
T |
|
| Q |
372 |
gctcgttatttaacacacattgcgcgtactcac |
404 |
Q |
| |
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| ||||||||||| |||||||| ||||||||| |
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| T |
37136687 |
tcacgttatttaactcacattgctcgtactcac |
37136719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 21597378 - 21597314
Alignment:
| Q |
115 |
caaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatg |
179 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| || ||||| ||| || |||| |||||| |
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|
| T |
21597378 |
caactatggctgaagaaactaaaaacccttctagagatatacctattggtttaattggttcaatg |
21597314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 10681104 - 10681195
Alignment:
| Q |
282 |
gctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtcaagc |
373 |
Q |
| |
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|||||||||||| | ||||||||||| |||||| |||| ||||| |||||||||||||| | ||||| | ||| |||| ||||||||||| |
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| T |
10681104 |
gctgttggaatgaaatgggctaagtatattgttgcatttggtgcattgaaaggaatgactagtgttttacttgttggtgctgttggtcaagc |
10681195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
90 |
gcttatattggctttgatgcagtttcaaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatgacgattacaa |
189 |
Q |
| |
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|||||| |||| || ||||||||||| || |||||||| ||||| || || ||||| | ||| || ||||| |||||| | ||||||||||| |||||| |
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| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
|
| Q |
190 |
ca |
191 |
Q |
| |
|
|| |
|
|
| T |
10681012 |
ca |
10681013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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