View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11934_low_2 (Length: 399)

Name: NF11934_low_2
Description: NF11934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11934_low_2
NF11934_low_2
[»] scaffold0053 (1 HSPs)
scaffold0053 (10-392)||(79414-79798)
[»] chr7 (20 HSPs)
chr7 (10-392)||(16090822-16091206)
chr7 (10-392)||(29181033-29181417)
chr7 (28-392)||(20906386-20906749)
chr7 (217-392)||(2971209-2971384)
chr7 (19-223)||(2966721-2966926)
chr7 (17-377)||(2465118-2465474)
chr7 (258-392)||(14319554-14319688)
chr7 (13-377)||(3857308-3857669)
chr7 (258-392)||(14230777-14230911)
chr7 (304-387)||(14567246-14567329)
chr7 (264-332)||(31155396-31155464)
chr7 (262-374)||(21230903-21231014)
chr7 (262-316)||(11382871-11382925)
chr7 (262-316)||(11389348-11389402)
chr7 (262-317)||(14422985-14423040)
chr7 (243-316)||(13679474-13679548)
chr7 (262-316)||(16009577-16009631)
chr7 (265-317)||(12590643-12590695)
chr7 (265-317)||(13007435-13007487)
chr7 (262-318)||(20311050-20311106)
[»] chr3 (19 HSPs)
chr3 (10-392)||(14865593-14865976)
chr3 (17-387)||(12033375-12033745)
chr3 (28-392)||(17131497-17131862)
chr3 (17-386)||(19235002-19235369)
chr3 (262-387)||(23370435-23370560)
chr3 (178-392)||(51301506-51301720)
chr3 (186-374)||(13323732-13323920)
chr3 (256-374)||(13302185-13302301)
chr3 (256-374)||(13312841-13312957)
chr3 (258-332)||(10389428-10389502)
chr3 (258-332)||(10414517-10414591)
chr3 (258-332)||(10421187-10421261)
chr3 (304-392)||(10555353-10555439)
chr3 (265-322)||(24933823-24933880)
chr3 (262-316)||(9534328-9534382)
chr3 (262-316)||(18929246-18929300)
chr3 (262-314)||(20247791-20247843)
chr3 (262-314)||(24192957-24193009)
chr3 (265-317)||(41455097-41455149)
[»] chr4 (6 HSPs)
chr4 (10-355)||(16146791-16147138)
chr4 (259-324)||(27906263-27906328)
chr4 (206-314)||(14486604-14486713)
chr4 (265-392)||(53483708-53483836)
chr4 (262-318)||(15408140-15408196)
chr4 (140-208)||(27906142-27906210)
[»] scaffold0072 (1 HSPs)
scaffold0072 (35-392)||(49894-50254)
[»] chr1 (8 HSPs)
chr1 (28-392)||(21710584-21710948)
chr1 (28-392)||(20851057-20851422)
chr1 (28-392)||(20857684-20858049)
chr1 (28-392)||(21706041-21706406)
chr1 (264-358)||(20044910-20045004)
chr1 (178-316)||(32651488-32651627)
chr1 (262-316)||(20437024-20437078)
chr1 (265-317)||(41112038-41112090)
[»] chr8 (9 HSPs)
chr8 (28-392)||(24320595-24320960)
chr8 (85-316)||(29643386-29643619)
chr8 (262-392)||(44477623-44477754)
chr8 (262-392)||(44492781-44492912)
chr8 (231-316)||(18614240-18614327)
chr8 (262-324)||(14056556-14056618)
chr8 (262-316)||(23482053-23482107)
chr8 (262-314)||(8727735-8727787)
chr8 (262-318)||(25111977-25112033)
[»] scaffold0023 (1 HSPs)
scaffold0023 (31-392)||(135208-135568)
[»] chr5 (22 HSPs)
chr5 (28-392)||(19236666-19237030)
chr5 (28-392)||(22460921-22461286)
chr5 (28-392)||(22467545-22467910)
chr5 (10-386)||(20772718-20773090)
chr5 (10-386)||(20781493-20781865)
chr5 (17-386)||(24929862-24930229)
chr5 (10-392)||(28895967-28896347)
chr5 (10-392)||(28909215-28909595)
chr5 (10-392)||(28924793-28925173)
chr5 (10-392)||(28945610-28945990)
chr5 (10-392)||(28889263-28889643)
chr5 (10-325)||(20819968-20820279)
chr5 (10-325)||(20827068-20827379)
chr5 (10-237)||(28931061-28931287)
chr5 (262-382)||(38144472-38144591)
chr5 (258-324)||(34830081-34830146)
chr5 (178-316)||(18407944-18408084)
chr5 (262-318)||(22438746-22438802)
chr5 (262-316)||(19512387-19512441)
chr5 (262-316)||(23111200-23111254)
chr5 (262-316)||(28370055-28370109)
chr5 (265-317)||(23528634-23528686)
[»] chr2 (16 HSPs)
chr2 (28-364)||(10342-10679)
chr2 (78-366)||(25180880-25181169)
chr2 (258-392)||(27207644-27207778)
chr2 (258-392)||(26885179-26885312)
chr2 (264-392)||(23168224-23168351)
chr2 (264-392)||(23579481-23579608)
chr2 (299-392)||(27366472-27366566)
chr2 (265-392)||(5705947-5706075)
chr2 (262-316)||(6483718-6483772)
chr2 (262-316)||(6487185-6487239)
chr2 (262-316)||(21908360-21908414)
chr2 (262-316)||(23265143-23265197)
chr2 (262-316)||(23280211-23280265)
chr2 (140-208)||(23168412-23168480)
chr2 (140-208)||(23579669-23579737)
chr2 (265-317)||(26583830-26583882)
[»] chr6 (23 HSPs)
chr6 (28-392)||(20007872-20008237)
chr6 (17-386)||(9099005-9099372)
chr6 (33-377)||(21364423-21364763)
chr6 (33-377)||(23968405-23968745)
chr6 (258-387)||(31252419-31252549)
chr6 (264-392)||(11288596-11288721)
chr6 (35-186)||(29097637-29097789)
chr6 (264-332)||(15458492-15458560)
chr6 (264-332)||(15465087-15465155)
chr6 (289-392)||(28288437-28288537)
chr6 (262-392)||(34639910-34640041)
chr6 (262-392)||(34646584-34646715)
chr6 (299-392)||(24563475-24563569)
chr6 (262-324)||(10986173-10986235)
chr6 (304-392)||(24641607-24641696)
chr6 (262-374)||(24512787-24512898)
chr6 (262-317)||(29614146-29614201)
chr6 (262-316)||(4477858-4477912)
chr6 (262-316)||(23839199-23839253)
chr6 (265-317)||(12168366-12168418)
chr6 (265-317)||(19287275-19287327)
chr6 (265-317)||(19785869-19785921)
chr6 (265-317)||(19878459-19878511)
[»] scaffold0131 (1 HSPs)
scaffold0131 (10-392)||(747-1126)
[»] scaffold1318 (1 HSPs)
scaffold1318 (168-392)||(1837-2062)
[»] scaffold0348 (1 HSPs)
scaffold0348 (34-360)||(9108-9434)
[»] scaffold0384 (1 HSPs)
scaffold0384 (10-358)||(16023-16370)
[»] scaffold1469 (1 HSPs)
scaffold1469 (34-332)||(1129-1425)
[»] scaffold0029 (3 HSPs)
scaffold0029 (21-377)||(91144-91499)
scaffold0029 (21-377)||(96870-97225)
scaffold0029 (264-317)||(111885-111938)
[»] scaffold0127 (1 HSPs)
scaffold0127 (245-387)||(10222-10364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (258-392)||(492953-493086)
[»] scaffold0553 (2 HSPs)
scaffold0553 (262-387)||(10125-10250)
scaffold0553 (289-358)||(11042-11111)
[»] scaffold0544 (1 HSPs)
scaffold0544 (262-387)||(1455-1580)
[»] scaffold0720 (1 HSPs)
scaffold0720 (258-392)||(3327-3461)
[»] scaffold0609 (1 HSPs)
scaffold0609 (258-392)||(5781-5916)
[»] scaffold0183 (1 HSPs)
scaffold0183 (264-386)||(6-125)
[»] scaffold0099 (1 HSPs)
scaffold0099 (65-315)||(12753-13019)
[»] scaffold0026 (2 HSPs)
scaffold0026 (262-392)||(111686-111817)
scaffold0026 (262-317)||(11850-11905)
[»] scaffold0249 (1 HSPs)
scaffold0249 (264-332)||(13879-13947)
[»] scaffold0261 (2 HSPs)
scaffold0261 (258-324)||(23562-23628)
scaffold0261 (140-208)||(23680-23748)
[»] scaffold0453 (1 HSPs)
scaffold0453 (258-321)||(10546-10609)
[»] scaffold0034 (1 HSPs)
scaffold0034 (258-346)||(73281-73365)
[»] scaffold0129 (1 HSPs)
scaffold0129 (265-392)||(45198-45326)
[»] scaffold0107 (1 HSPs)
scaffold0107 (262-374)||(40475-40586)
[»] scaffold2054 (1 HSPs)
scaffold2054 (264-317)||(717-770)
[»] scaffold0235 (1 HSPs)
scaffold0235 (263-374)||(22536-22646)
[»] scaffold1461 (1 HSPs)
scaffold1461 (258-316)||(1485-1543)
[»] scaffold0019 (1 HSPs)
scaffold0019 (262-318)||(135474-135530)
[»] scaffold0924 (1 HSPs)
scaffold0924 (262-317)||(750-805)
[»] scaffold0247 (1 HSPs)
scaffold0247 (262-317)||(11342-11397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (262-317)||(30858-30913)
[»] scaffold0317 (1 HSPs)
scaffold0317 (243-316)||(1367-1441)
[»] scaffold0222 (1 HSPs)
scaffold0222 (262-316)||(16821-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (262-316)||(116897-116951)
[»] scaffold0085 (1 HSPs)
scaffold0085 (28-69)||(3921-3962)
[»] scaffold0310 (1 HSPs)
scaffold0310 (262-318)||(17644-17700)
[»] scaffold0025 (1 HSPs)
scaffold0025 (262-314)||(14398-14450)


Alignment Details
Target: scaffold0053 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 79798 - 79414
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  79798 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 79699  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  79698 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 79599  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79598 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 79499  T
Q  309 ttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  79498 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 79414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 16090822 - 16091206
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16090822 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 16090921  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16090922 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 16091021  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16091022 tcatcattaacccttattttcccaattttaccttaggaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccaccc 16091121  T
Q  309 ttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16091122 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 16091206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 29181417 - 29181033
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29181417 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 29181318  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  29181317 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaa 29181218  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29181217 tcatcattaacccttattttccaaattttaccttaagaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 29181118  T
Q  309 ttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29181117 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 29181033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 20906749 - 20906386
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||| |||||||||||| |||||||||| | || ||||||  || ||||||||||||||||||||||||||||||||||||||||     
T  20906749 aactaaacatcaacaacaacaattcagcccattcaagcattcttacaaaacttctcaa-ttcatccatcatattctattttcatttcaattacgatcaac 20906651  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |    
T  20906650 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaat 20906551  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  20906550 t-cccaattttaccttaagaatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaag 20906452  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  20906451 gacaaatagctcagcaaatccgttcctaagttcttctctcttggtcttctccccttgccttagctt 20906386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 217 - 392
Target Start/End: Original strand, 2971209 - 2971384
Alignment:
Q  217 aacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2971209 aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta 2971308  T
Q  317 gaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2971309 gaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 2971384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 2966721 - 2966926
Alignment:
Q  19 aggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaatt 118  Q
    |||||||| ||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  2966721 aggaacagaaactaaacatcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcattccaatt 2966820  T
Q  119 acgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcatta 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||||| |||||||||||| ||| ||||||||    
T  2966821 acgatcaacatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcatta 2966920  T
Q  218 accctt 223  Q
    ||||||    
T  2966921 accctt 2966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 2465118 - 2465474
Alignment:
Q  17 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttca 115  Q
    ||||||||| ||| | |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  ||    
T  2465118 aaaggaacaacaattcaacatcaacaacaacaattcattcaaatcaa-cattcattcagaactttcaaaacttcatccattatattctaccttcatc-ca 2465215  T
Q  116 attacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 215  Q
    |||| |||||| |||||||| |  || || ||||||||| ||||||| |||||| |||||||||||||| | |||||||| |||||||  ||||   |||    
T  2465216 attatgatcaacatcaacaatacagagtaggaaatcatattaatcat-caaatataacattataaacctaaatcttacacattttcttcaaaattgccat 2465314  T
Q  216 taacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctt 315  Q
    ||||||| |||| || | ||||||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||||| ||| ||||||||||||||||    
T  2465315 taaccctaatttcccaatttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccacccttacctt 2465414  T
Q  316 agaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctc 377  Q
    ||||||||||||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  2465415 agaattgcaaagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 2465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 14319688 - 14319554
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 357  Q
    ||||||||||||||||||| | ||||  |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  14319688 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 14319589  T
Q  358 tcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||| |||||||||||||||||| ||||    
T  14319588 tcttctctcttagtcttctctccttgccttagctt 14319554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 3857669 - 3857308
Alignment:
Q  13 atcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcat 111  Q
    |||||||| | |||||| | | |||||| |||| |||||||  | |||||| |||||||||||||||| ||||| |||||| || ||||||||  |||||    
T  3857669 atcaaaagaaccagcaattcagcatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatctattatattctaccttcat 3857570  T
Q  112 ttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatca 211  Q
      ||||||  ||||| |||||||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||  ||||      
T  3857569 c-caattataatcaacatcaacaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattg 3857472  T
Q  212 tcattaacccttattttcccaatttt---accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
     |||||||||| |||| |||||||||   ||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||| ||||| |||||||||    
T  3857471 ccattaaccctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattg-aagatgatcccaccc 3857374  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctc 377  Q
    ||||||||||||||| |||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  3857373 ttaccttagaattgc-aagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 3857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 258 - 392
Target Start/End: Original strand, 14230777 - 14230911
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 357  Q
    ||||||||||||||||||| | ||||     |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||    
T  14230777 gattaattttcagaaattatacattaaattcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacgacaaatccgttcctaagt 14230876  T
Q  358 tcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||| |||||||||||||||||||||||||| ||||    
T  14230877 tctcctctcttggtcttctctccttgccttagctt 14230911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 14567246 - 14567329
Alignment:
Q  304 cacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 387  Q
    ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14567246 cacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttttctccttgcctt 14567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 31155396 - 31155464
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 31155464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 21231014 - 21230903
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttct 360  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || ||||||||||||||| ||||  ||| | || ||||||| ||||| ||||||| | |||    
T  21231014 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgc--agaaagattgcacagcaaaatcggttcctaggctct 21230917  T
Q  361 tctctcttggtctt 374  Q
    ||||||||| ||||    
T  21230916 tctctcttgttctt 21230903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 11382925 - 11382871
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||    
T  11382925 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 11389402 - 11389348
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||    
T  11389402 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 14422985 - 14423040
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  14422985 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 14423040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 13679474 - 13679548
Alignment:
Q  243 aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||| ||||||| ||| |||||||| |||||| |||| ||||  ||||||||||| || |||||||||||||    
T  13679474 aagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 16009577 - 16009631
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  16009577 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 12590695 - 12590643
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  12590695 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 13007435 - 13007487
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  13007435 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 13007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 20311106 - 20311050
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 318  Q
    ||||||||||||||| |  |||||| |||||| ||||| || |||||||||||||||    
T  20311106 aattttcagaaattatacgttatgattattgagagatagtctcacccttaccttaga 20311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 14865593 - 14865976
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14865593 gacatcaacaggaacaacaactaaacatcaacaacaacaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 14865692  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa- 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||     
T  14865693 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaa 14865792  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14865793 tcatcattaaccattattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 14865892  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14865893 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 14865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 12033745 - 12033375
Alignment:
Q  17 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 116  Q
    |||||||||| ||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  12033745 aaaggaacagaaactaaacatcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcaattcaa 12033646  T
Q  117 ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcat 215  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||  || ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  12033645 ttacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcat 12033546  T
Q  216 taacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctt 315  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12033545 taacccttaatttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttacctt 12033446  T
Q  316 agaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 387  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12033445 agaattgcaaagacaaa-agcacatcaaatcagttcctaagttcttctctcttggtcttctctccttacctt 12033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 17131497 - 17131862
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||| ||||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||| |||||     
T  17131497 aactaaacatcaacaacaacaattcagctcatttaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacaatcaac 17131596  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| ||||||||||||||||||| |||  || |||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  17131597 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 17131696  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17131697 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 17131796  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17131797 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 17131862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 19235369 - 19235002
Alignment:
Q  17 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 116  Q
    |||| |||||||| | | |||||| |||| ||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  19235369 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaa 19235270  T
Q  117 -ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 215  Q
     ||| ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||    
T  19235269 attatgatcaatatcaacaatatagattaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacattttcttcagaatcatcat 19235171  T
Q  216 taacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  19235170 taaccctaaatttcccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttacct 19235071  T
Q  315 tagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 386  Q
    |||||||||||||| ||  ||  |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  19235070 tagaattgcaaagataa--agtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 19235002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 23370560 - 23370435
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 361  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  23370560 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 23370461  T
Q  362 ctctcttggtcttctctccttgcctt 387  Q
    ||||||||||||||||||||||||||    
T  23370460 ctctcttggtcttctctccttgcctt 23370435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 392
Target Start/End: Original strand, 51301506 - 51301720
Alignment:
Q  178 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttac-cttaagaacagtttaattgattaattttcagaaatta 276  Q
    |||||||||||||| |||| |  ||||||||| | ||| |||||| |||  ||||||||||  || | ||||| || |||||||||||||||||||||||    
T  51301506 taaacctgattcttgcaccatccctttcaaattagcatcaaccctaatt--cccaattttattctcatgaacaattcaattgattaattttcagaaatta 51301603  T
Q  277 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttctctcttggtctt 374  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||  | | |||||| ||||  |||   ||||||||||||||||||||    
T  51301604 catattatgattattggaagataatctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttctctcttggtctt 51301702  T
Q  375 ctctccttgcctttgctt 392  Q
    ||||||||||||| ||||    
T  51301703 ctctccttgccttagctt 51301720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 374
Target Start/End: Complemental strand, 13323920 - 13323732
Alignment:
Q  186 attcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aagaacagtttaatt-gattaattttcagaaattacatatt 282  Q
    ||||||||||| || ||||| || ||||||| |||||| | || |||||||||| ||| ||||||| | ||||| |||||||||||||||||||||||||    
T  13323920 attcttacaccattcctttcgaagtcatcatcaaccctaaatt-cccaattttatcttcaagaacaatctaatttgattaattttcagaaattacatatt 13323822  T
Q  283 atgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtctt 374  Q
    |||| ||||||||||||||| |||||||||||||||||||   ||| ||| |   ||||||||||||||||| ||||||||| |||| ||||    
T  13323821 atgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaaatcagcaaatcagttcctaggttcttctcccttgttctt 13323732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 13302301 - 13302185
Alignment:
Q  256 ttgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaa 355  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||| | |||||||||||||||||||     
T  13302301 ttgattaattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13302204  T
Q  356 gttcttctctcttggtctt 374  Q
    |||| |||| |||| ||||    
T  13302203 gttcatctcccttgttctt 13302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 13312957 - 13312841
Alignment:
Q  256 ttgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaa 355  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||| | |||||||||||||||||||     
T  13312957 ttgattaattttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13312860  T
Q  356 gttcttctctcttggtctt 374  Q
    |||| |||| |||| ||||    
T  13312859 gttcatctcccttgttctt 13312841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 10389502 - 10389428
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||| ||||||||||||| | ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10389502 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10389428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 10414591 - 10414517
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||| ||||||||||||| | ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10414591 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10414517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 10421261 - 10421187
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||| ||||||||||||| | ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10421261 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 10555353 - 10555439
Alignment:
Q  304 cacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||| ||| ||||| || ||  ||||||| | |||||| |||||||||||||||||||| ||||||||| ||||    
T  10555353 cacccttaccttagaattgtaaacacaaa-agtacgacaaatcaatccctaagctcttctctcttggtcttctc-ccttgccttagctt 10555439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 24933880 - 24933823
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattg 322  Q
    |||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||    
T  24933880 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattg 24933823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 9534328 - 9534382
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  9534328 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 18929246 - 18929300
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  18929246 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 20247843 - 20247791
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  20247843 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 24192957 - 24193009
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  24192957 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 41455149 - 41455097
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  41455149 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41455097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 16147138 - 16146791
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16147138 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 16147039  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16147038 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 16146939  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146938 tcatcattaacccttattttccaaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 16146839  T
Q  309 ttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaa 355  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16146838 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaa 16146791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 27906263 - 27906328
Alignment:
Q  259 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 324  Q
    |||||||||||||||||| | |||||||  ||||||||||||||||||||||| ||||||||||||    
T  27906263 attaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 14486604 - 14486713
Alignment:
Q  206 aaatcatcattaacccttattttcccaattttacctt-aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcc 303  Q
    |||||||||| |||||| || |||||||||||| ||| ||||||| || |||| ||||||||||||||||||| |||||||||  |||||| |||| ||     
T  14486604 aaatcatcatcaaccct-atattcccaattttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtct 14486702  T
Q  304 cacccttacct 314  Q
    |||||||||||    
T  14486703 cacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 392
Target Start/End: Original strand, 53483708 - 53483836
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttc 362  Q
    |||||| ||||| | ||||||| |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   ||||||||    
T  53483708 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 53483806  T
Q  363 tctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||| ||||| ||||    
T  53483807 tctcttggtcttctctcctagccttagctt 53483836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 15408140 - 15408196
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 318  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||||    
T  15408140 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 15408196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 27906142 - 27906210
Alignment:
Q  140 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    ||||||||||||||||  | |||  || |||||||   ||||| |||||||||||||||||||||||||    
T  27906142 gattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaa 27906210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 35 - 392
Target Start/End: Complemental strand, 50254 - 49894
Alignment:
Q  35 catcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 134  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50254 catcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 50155  T
Q  135 acatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaa 233  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50154 acatggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaa 50055  T
Q  234 -ttttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50054 tttttaccttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 49955  T
Q  333 tagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  49954 tagcacaacaaaatcagttcctaagttcttctctcttggttttctctctttgccttagctt 49894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 21710584 - 21710948
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||| |||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||| ||||||     
T  21710584 aactaaacatcaacaacaacaattcagcccattcaagcattcatacaaagcttccaaaattcatccatcatattctattttcattccaattatgatcaac 21710683  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| ||||||| ||||||||||| ||| ||| || ||||||||||||||||| |||| || |||||||||||| ||||| | |||||| | |    
T  21710684 atcaacaacatagattaaggaatcatactaaacat-caagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaat 21710782  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21710783 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 21710882  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21710883 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 20851422 - 20851057
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  20851422 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 20851323  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  20851322 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 20851223  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20851222 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 20851123  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20851122 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20851057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 20858049 - 20857684
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  20858049 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 20857950  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| |||||||||| |||||||| |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  20857949 atcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 20857850  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20857849 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 20857750  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20857749 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 21706041 - 21706406
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  21706041 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 21706140  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| |||||||||| |||||||| |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  21706141 atcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 21706240  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21706241 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 21706340  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21706341 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 358
Target Start/End: Complemental strand, 20045004 - 20044910
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 358  Q
    ||||||||| ||| |||||| ||  |||||| ||||||||||||||||||||||||||| |   | || || ||||||||||||| |||||||||    
T  20045004 ttttcagaatttatatattaagatcattgaaggataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 20044910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 32651488 - 32651627
Alignment:
Q  178 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttacctt--aagaacagtttaatt-gattaattttcagaaat 274  Q
    ||||| ||||||||||||| |  ||||||||||| ||| |||||| |||  |||||||||   ||  |||||||  | |||| ||| |||||||||||||    
T  32651488 taaacatgattcttacaccatccctttcaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaactcaattagatcaattttcagaaat 32651585  T
Q  275 tacatattatgactattgaaagataatcccacccttacctta 316  Q
    || ||| ||||| |||||| ||||| || |||||||||||||    
T  32651586 tatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 20437078 - 20437024
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  20437078 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 41112038 - 41112090
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  41112038 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41112090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 24320960 - 24320595
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  24320960 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 24320861  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||| |||||||||||| | || ||||||||||||||| ||||| |||||||| | |    
T  24320860 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaat 24320761  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320760 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 24320661  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24320660 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 24320595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 85 - 316
Target Start/End: Complemental strand, 29643619 - 29643386
Alignment:
Q  85 aattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacct 184  Q
    |||||||||| ||||||||||||||||| |||||  |||||  |||||||  || ||||||||||||||||| | ||   || |||||||  || ||||     
T  29643619 aattcatccaacatattctattttcattccaattctgatcacaatcaacattatagattaagaaatcatactgaacaccaaattacaacacaattaaccc 29643520  T
Q  185 gattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttaccttaa-gaacagtttaatt-gattaattttcagaaattacatat 281  Q
     |||||||||||  | ||| | |||||||||| |||||||| || | |||||||| ||| | ||||| || |||| ||||||||||||||||||||||||    
T  29643519 aattcttacaccaatccttcctaaatcatcatcaacccttaatt-ctcaattttatcttcatgaacaattcaatttgattaattttcagaaattacatat 29643421  T
Q  282 tatgactattgaaagataatcccacccttacctta 316  Q
    ||||| ||||||||||||||| |||||||||||||    
T  29643420 tatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 44477623 - 44477754
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 359  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||  |||||||  | | |||||| ||||  |||   |||||    
T  44477623 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44477721  T
Q  360 ttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||| ||||    
T  44477722 ttctctcttggtcttctctccttgccttagctt 44477754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 44492781 - 44492912
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 359  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||  |||||||  | | |||||| ||||  |||   |||||    
T  44492781 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44492879  T
Q  360 ttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||| ||||    
T  44492880 ttctctcttggtcttctctccttgccttagctt 44492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 18614240 - 18614327
Alignment:
Q  231 caattttacctt-aagaacagtttaattg-attaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    |||||||| ||| ||||||| || ||||| || ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  18614240 caattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 14056618 - 14056556
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 324  Q
    ||||||||||| ||||||| ||| | |||||| ||||| || ||||||||||||||| |||||    
T  14056618 aattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgca 14056556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 23482107 - 23482053
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23482107 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 8727787 - 8727735
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||||||||||| | ||||||| ||||||  ||||||| |||||||||||    
T  8727787 aattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 25111977 - 25112033
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 318  Q
    ||||||||||| ||||||| ||| | |||||| ||||| || |||||||||||||||    
T  25111977 aattttcagaatttacatactattattattgagagatagtctcacccttaccttaga 25112033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 135208 - 135568
Alignment:
Q  31 taaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatc 130  Q
    |||||||||| |||| |||||||||||| |||||||||||| || ||||||| || |||||||||||||||||||||||||| |||||  |||||  |||    
T  135208 taaacatcaacaacaacaattcagcccattcaagcattcatacaaaacttcccaa-ttcatccatcatattctattttcattccaattttgatcacgatc 135306  T
Q  131 aacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttc 229  Q
    |||||||| ||||||||||||||||||| |||  || |||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| || |    
T  135307 aacaacatagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaatt-c 135404  T
Q  230 ccaattttacctt-aagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaaga 328  Q
     |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  135405 tcaattttacctttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttagaattgcaaaga 135504  T
Q  329 caaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  135505 caaatagcacagcaaatcagttcctaagctcttctctcttggtcttctctccttgccttagctt 135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 19236666 - 19237030
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| ||||||| |||||||||||| ||||||||||||      
T  19236666 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatactctattttcattccaattacgatcagc 19236765  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaa-tacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttat 225  Q
    ||||||||||| |||||||||  |||||||| |  ||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| |     
T  19236766 atcaacaacatagattaagaacacatactaaac--tcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 19236863  T
Q  226 tttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 325  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19236864 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 19236963  T
Q  326 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19236964 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 19237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 22460921 - 22461286
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  22460921 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 22461020  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattt 227  Q
    ||||||||||| || ||||||| |||||||| |||  || ||| ||| |||||||||||| |||| |||||||||||||||||||| |||||||| | ||    
T  22461021 atcaacaacatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatt 22461120  T
Q  228 tcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22461121 tcccaattttaccttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 22461220  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22461221 gacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 22467545 - 22467910
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || ||||| |||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  22467545 aactaaacatcaacaacatcaattctattcattcaagaattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 22467644  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattt 227  Q
    ||||||||||| || ||||||| |||||||| |||  || ||| ||| |||||||||||| |||| |||||||||||||||||||| |||||||| | ||    
T  22467645 atcaacaacatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatt 22467744  T
Q  228 tcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22467745 tcccaattttaccttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 22467844  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22467845 gacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22467910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 20772718 - 20773090
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctatttt 108  Q
    ||||||||||| |||| ||| | |||||||| |||| ||||| |  |||||||| |||||||||||||||||||||| ||||||||| |||||||| |||    
T  20772718 gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctacttt 20772817  T
Q  109 catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    |||  |||||| |||||| |||||||| || || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  |||    
T  20772818 catc-caattatgatcaacatcaacaatatagagtaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacattttcttcaaaa 20772915  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  20772916 tcatcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccaccc 20773015  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 386  Q
    |||||||||||||||||||| ||  || ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20773016 ttaccttagaattgcaaagataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 20781493 - 20781865
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctatttt 108  Q
    ||||||||||| |||| ||| | |||||||| |||| ||||| |  |||||||| |||||||||||||||||||||| ||||||||| |||||||| |||    
T  20781493 gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctacttt 20781592  T
Q  109 catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    |||  |||||| |||||| |||||||| || || || ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||  |||    
T  20781593 catc-caattatgatcaacatcaacaatatagagtaggaaatcataataatcat-caaatacaacattataaacctgattcttacacattttcttcaaaa 20781690  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| | |||||||||||||||||||||    
T  20781691 tcatcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccaccc 20781790  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 386  Q
    |||||||||||||||||||| ||  || ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20781791 ttaccttagaattgcaaagataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20781865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 24930229 - 24929862
Alignment:
Q  17 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 116  Q
    |||| |||||||| | | |||||| |||| ||||| |  |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| | |||    
T  24930229 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaacattcatctatcatattctattttcactccaa 24930130  T
Q  117 -ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 215  Q
     ||| ||||||||||||||  || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||   |||||||||    
T  24930129 attatgatcaatatcaacattatagattaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacatttccttcagaatcatcat 24930031  T
Q  216 taacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| |||| |||||| | ||||||  |||||||||||||||||||||||||||||    
T  24930030 taaccctaaatttcccaattttaccttaagaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttacct 24929931  T
Q  315 tagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 386  Q
    |||||||| ||||| ||  ||  |||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  24929930 tagaattgtaaagataa--agtgcagcaagtcaattcctaagctcttctctcttggtcttctc-ccttgcct 24929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 28896347 - 28895967
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28896347 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28896248  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28896247 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28896150  T
Q  210 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28896149 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28896050  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||| | |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28896049 ttaccttagaattgcaacggcaaa-agcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 28909595 - 28909215
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||| ||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28909595 gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28909496  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28909495 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28909398  T
Q  210 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28909397 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28909298  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28909297 ttaccttagaattgcaacgacaaa-agcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 28925173 - 28924793
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28925173 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28925074  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28925073 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28924976  T
Q  210 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28924975 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28924876  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||| | |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28924875 ttaccttagaattgcaacggcaaa-agcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 28945990 - 28945610
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||| ||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28945990 gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28945891  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28945890 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28945793  T
Q  210 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28945792 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28945693  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28945692 ttaccttagaattgcaacgacaaa-agcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 28889643 - 28889263
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28889643 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28889544  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28889543 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28889446  T
Q  210 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 308  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28889445 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28889346  T
Q  309 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||| | |||| ||||  |||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28889345 ttaccttagaattgcaacggcaaa-agcaatgcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 20819968 - 20820279
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| ||||| ||||||||||||||||||| |||||  | | |||||||| ||| | || |||||| |    
T  20819968 gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc 20820067  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| ||||||   |||||| |   |||| | | ||||||| ||||| ||||||||||||||||||||||| |||||  | || ||||  ||||    
T  20820068 atc-caattatgatcaactacaacaatactaattaggga-tcatactcatcat-caaatacaacattataaacctgaatcttatgcattctcttcaaaat 20820164  T
Q  210 catcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccct 309  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||| ||||  |||||  |||||||||| ||||||  ||||||||||||| ||||||||||    
T  20820165 catcattaaccctaattttcc-aattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccct 20820263  T
Q  310 taccttagaattgcaa 325  Q
    ||||||||||||||||    
T  20820264 taccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 20827068 - 20827379
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| ||||| ||||||||||||||||||| |||||  | | |||||||| ||| | || |||||| |    
T  20827068 gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc 20827167  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| ||||||   |||||| |   |||| | | ||||||| ||||| ||||||||||||||||||||||| |||||  | || ||||  ||||    
T  20827168 atc-caattatgatcaactacaacaatactaattaggga-tcatactcatcat-caaatacaacattataaacctgaatcttatgcattctcttcaaaat 20827264  T
Q  210 catcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccct 309  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||| ||||  |||||  |||||||||| ||||||  ||||||||||||| ||||||||||    
T  20827265 catcattaaccctaattttcc-aattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccct 20827363  T
Q  310 taccttagaattgcaa 325  Q
    ||||||||||||||||    
T  20827364 taccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 28931287 - 28931061
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28931287 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28931188  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctt-tcaaa 208  Q
    | | |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||   |||    
T  28931187 a-tccaattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacccattttcttcaaaaa 28931090  T
Q  209 tcatcattaacccttattttcccaatttt 237  Q
     |||||| || ||| ||||||||||||||    
T  28931089 ccatcatcaaacctaattttcccaatttt 28931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 382
Target Start/End: Complemental strand, 38144591 - 38144472
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagca-aatcagttcctaagttct 360  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||  |||||  ||   ||  ||||||| |||| |||||||||||||    
T  38144591 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgca--gaatgattacacagcacaatcggttcctaagttct 38144494  T
Q  361 tctctcttggtcttctctcctt 382  Q
    ||||||||||||||||||||||    
T  38144493 tctctcttggtcttctctcctt 38144472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 34830081 - 34830146
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 324  Q
    |||| |||||||||||||| | ||||  | |||||||||||||||||||||||||||||||||||||    
T  34830081 gattgattttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 18408084 - 18407944
Alignment:
Q  178 taaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt--aagaacagtttaatt-gattaattttcagaaa 273  Q
    ||||| ||||||||||||| || |||||||| ||| ||| |||||| |||  |||||||||   ||  ||||||| || |||| ||| ||||||||||||    
T  18408084 taaacatgattcttacaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaa 18407987  T
Q  274 ttacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||| ||||||||| |||||| ||||| || |||||||||||||    
T  18407986 ttatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 22438802 - 22438746
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 318  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||    
T  22438802 aattttcagaaattatacattatgattattgagagatagtctcacccttaccttaga 22438746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 19512387 - 19512441
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  19512387 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 23111254 - 23111200
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23111254 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 28370109 - 28370055
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  28370109 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 23528634 - 23528686
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  23528634 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 23528686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 364
Target Start/End: Original strand, 10342 - 10679
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| ||||||||||| |  || |||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||      
T  10342 aactaaacatcaacaacatcaattcggttcattcaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacgatcagc 10441  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 226  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||| ||||||||| || | || ||||||||||||||| ||||| |||||||| | |    
T  10442 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaat 10541  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 326  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10542 ttcccaattttaccttaagaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatttcaaa 10641  T
Q  327 gacaaatagcacagcaaatcagttcctaagttcttctc 364  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  10642 gacaaaaagcacagcaaatcagttcctaagtccttctc 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 78 - 366
Target Start/End: Complemental strand, 25181169 - 25180880
Alignment:
Q  78 cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacatta 177  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||  || ||||| | ||    
T  25181169 cttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaata 25181070  T
Q  178 taaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaatta 276  Q
    ||||||||||   || ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25181069 taaacctgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttcagaaatta 25180970  T
Q  277 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctc 366  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25180969 tatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 27207778 - 27207644
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 357  Q
    ||||||||||||||||||| | ||||  |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  27207778 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 27207679  T
Q  358 tcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||||| ||||    
T  27207678 tcttctctcttggtcttctctccttgccttagctt 27207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 258 - 392
Target Start/End: Original strand, 26885179 - 26885312
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 357  Q
    ||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||    
T  26885179 gattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagt 26885277  T
Q  358 tcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||| ||||||||||||||| ||||    
T  26885278 tcttctctcttggttttctctccttgccttagctt 26885312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 23168351 - 23168224
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttct 363  Q
    ||||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||| | ||||| ||||||||||| | || |||||||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttct 23168253  T
Q  364 ctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||| ||||    
T  23168252 ctcttggtcttctctccttgccttagctt 23168224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 23579608 - 23579481
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttct 363  Q
    ||||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||| | ||||| ||||||||||| | || |||||||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttct 23579510  T
Q  364 ctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||| ||||    
T  23579509 ctcttggtcttctctccttgccttagctt 23579481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 392
Target Start/End: Complemental strand, 27366566 - 27366472
Alignment:
Q  299 aatcccacccttaccttagaattgcaaagacaaatag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||| ||||||||||||||||||||||||||||| |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  27366566 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 27366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 392
Target Start/End: Complemental strand, 5706075 - 5705947
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttc 362  Q
    |||||| ||||| | ||||||| || ||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   ||||||||    
T  5706075 tttcaggaattatagattatgattaatgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 5705977  T
Q  363 tctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||| ||||| ||||    
T  5705976 tctcttggtcttctctcctagccttagctt 5705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 6483718 - 6483772
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  6483718 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 6487185 - 6487239
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  6487185 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 21908360 - 21908414
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  21908360 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 23265143 - 23265197
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23265143 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 23280211 - 23280265
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23280211 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 23168480 - 23168412
Alignment:
Q  140 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||| |||||||||||||||||||||    
T  23168480 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaa 23168412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 23579737 - 23579669
Alignment:
Q  140 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||| |||||||||||||||||||||    
T  23579737 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaa 23579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 26583830 - 26583882
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  26583830 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 26583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 20008237 - 20007872
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 127  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||| ||||||||| |||||||||||||||||||| ||||||||||||      
T  20008237 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttctaaaattcattcatcatattctattttcattccaattacgatcagc 20008138  T
Q  128 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttatt 226  Q
    |||||||| || |||||||||| |||||||| |||  || ||||||| |||||||||||| |||| |||||||||||| |||||||| |||||||| | |    
T  20008137 atcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 20008038  T
Q  227 ttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 325  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20008037 ttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatattatgactattgaaagatgatcccacccttaccttagaattgcaa 20007938  T
Q  326 agacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  20007937 agacaaa-agcacagcaaatgagttcctaagttcttctctcttggtcttctctccttgccttagctt 20007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 9099372 - 9099005
Alignment:
Q  17 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 116  Q
    |||| |||||||| | | |||||| |||| ||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  9099372 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaa 9099273  T
Q  117 -ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 215  Q
     ||| ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||    
T  9099272 attatgatcaatatcaacaatatagattaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacattttcttcagaatcatcat 9099174  T
Q  216 taacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  9099173 taaccctaaatttcccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttacct 9099074  T
Q  315 tagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 386  Q
    |||||||||||||| ||  ||  |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  9099073 tagaattgcaaagataa--agtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 9099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 33 - 377
Target Start/End: Complemental strand, 21364763 - 21364423
Alignment:
Q  33 aacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatca 131  Q
    |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| ||||    
T  21364763 aacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatca 21364665  T
Q  132 acaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttccc 231  Q
    |||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||  |||||||  |||    |||||||||| |||| |||    
T  21364664 acaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-ccc 21364567  T
Q  232 aattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 331  Q
    ||||||||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | || |||| |||||||||||||||||||| |||||||||||||||    
T  21364566 aattttaccataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaa 21364468  T
Q  332 atagcacagcaaatcagttcctaagttcttctctcttggtcttctc 377  Q
    | ||||||||||| || |||||| ||||||||||||||||||||||    
T  21364467 a-agcacagcaaaacaattcctaggttcttctctcttggtcttctc 21364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 33 - 377
Target Start/End: Complemental strand, 23968745 - 23968405
Alignment:
Q  33 aacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatca 131  Q
    |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| ||||    
T  23968745 aacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatca 23968647  T
Q  132 acaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttccc 231  Q
    |||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||  |||||||  |||    |||||||||| |||| |||    
T  23968646 acaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-ccc 23968549  T
Q  232 aattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 331  Q
    ||||||||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | || |||| |||||||||||||||||||| |||||||||||||||    
T  23968548 aattttaccataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaa 23968450  T
Q  332 atagcacagcaaatcagttcctaagttcttctctcttggtcttctc 377  Q
    | ||||||||||| || |||||| ||||||||||||||||||||||    
T  23968449 a-agcacagcaaaacaattcctaggttcttctctcttggtcttctc 23968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 387
Target Start/End: Original strand, 31252419 - 31252549
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaa 355  Q
    ||||||||||||||||||| ||||||| |  ||| |||||||||| ||||||||||||||||||||||||||||  | | |||||| |||| ||||||||    
T  31252419 gattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcctaa 31252517  T
Q  356 gttcttctctcttggtcttctctccttgcctt 387  Q
    ||||||||||||||||||||||||||||||||    
T  31252518 gttcttctctcttggtcttctctccttgcctt 31252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 11288721 - 11288596
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttct 363  Q
    ||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||| ||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgccaagacaaa-aacacagc-aatcagttcctaagctcttct 11288624  T
Q  364 ctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||| ||||||||| ||||    
T  11288623 ctcttggtcttctc-ccttgccttagctt 11288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 29097637 - 29097789
Alignment:
Q  35 catcaagaacatcaattcagcccaatcaagcattcattcagaacttcc-aaaattcatccatcatattctattttcatttc-aattacgatcaatatcaa 132  Q
    |||||| |||| ||||| |  |||||||| |||||||||||||||||| |||||||||| || |||||||||||||| ||| ||||| ||||||||||||    
T  29097637 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaaattcatctattatattctattttcacttcaaattatgatcaatatcaa 29097736  T
Q  133 caacatggattaagaaatcatactaatcattcaaatacaacattataaacctga 186  Q
    ||  || ||||| |||||||||||||||| |||||||||||| |||||||||||    
T  29097737 cattatagattaggaaatcatactaatca-tcaaatacaacagtataaacctga 29097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 15458492 - 15458560
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 15458560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 15465087 - 15465155
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 15465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 28288537 - 28288437
Alignment:
Q  289 attgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttt 388  Q
    ||||| ||||| || ||||||||||||||||||||||||||||| | |||||| |||||||||||||| | |||||||||||||||||| |||||||||     
T  28288537 attgagagatagtctcacccttaccttagaattgcaaagacaaa-aacacagc-aatcagttcctaagcttttctctcttggtcttctc-ccttgcctta 28288441  T
Q  389 gctt 392  Q
    ||||    
T  28288440 gctt 28288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 392
Target Start/End: Complemental strand, 34640041 - 34639910
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 359  Q
    ||||||||||||||| | |||| || |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   |||||    
T  34640041 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34639943  T
Q  360 ttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||| ||||    
T  34639942 ttctctcttggtcttctctccttgccttagctt 34639910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 392
Target Start/End: Complemental strand, 34646715 - 34646584
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 359  Q
    ||||||||||||||| | |||| || |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   |||||    
T  34646715 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34646617  T
Q  360 ttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||| ||||    
T  34646616 ttctctcttggtcttctctccttgccttagctt 34646584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 24563475 - 24563569
Alignment:
Q  299 aatcccacccttaccttagaattgcaaagacaaatag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||| ||||||||||||||||||||||||||||| |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  24563475 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 24563569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 10986235 - 10986173
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 324  Q
    |||||| |||||||| | ||||||| |||||||||||| || |||||||||||||||||||||    
T  10986235 aatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgca 10986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 24641696 - 24641607
Alignment:
Q  304 cacccttaccttagaattgcaaagacaaatag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||| |||||||| |   |||||||| ||  |||   ||||||||||||||||||||||||||||||||| ||||    
T  24641696 cacccttaccttagaattgcgaagacaaagaaaacacagcaa-tcgattctctagttcttctctcttggtcttctctccttgccttagctt 24641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 24512898 - 24512787
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttct 360  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||| |||||||| ||||  ||| | || ||||||| ||||| ||||||| | |||    
T  24512898 aattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgc--agaaagattgcacagcaaaatcggttcctaggctct 24512801  T
Q  361 tctctcttggtctt 374  Q
    ||||||||| ||||    
T  24512800 tctctcttgttctt 24512787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 29614201 - 29614146
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  29614201 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 29614146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 4477858 - 4477912
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  4477858 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 23839199 - 23839253
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  23839199 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 12168366 - 12168418
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  12168366 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12168418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 19287275 - 19287327
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19287275 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19287327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 19785921 - 19785869
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19785921 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 19878459 - 19878511
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19878459 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19878511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 747 - 1126
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 109  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||||||||| || |||||  ||| |||||||| ||| | || ||||||||    
T  747 gacatcaacaggaacagcaactaaacataaacaacaacaatccagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttc 846  T
Q  110 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 209  Q
    ||  |||||| |||||| | |||||  || |||    || || |||||||||| |||| ||||| |||||||||| | |||||||| |||||||  ||||    
T  847 atc-caattatgatcaacaacaacattatagatcggaaactcttactaatcat-caaacacaactttataaacctaaatcttacacattttcttcaaaat 944  T
Q  210 catcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccct 309  Q
    |  |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||| | ||||||| |||||||| |||| ||||||||||    
T  945 cgccattaaccctaattttcccaattttaccataagaacagttaaattgcttaattttcagaaatcatatattatcactattgagagatgatcccaccct 1044  T
Q  310 taccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  1045 taccttagaattgcaaagacaaa-agcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 168 - 392
Target Start/End: Complemental strand, 2062 - 1837
Alignment:
Q  168 tacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aagaacagtttaattgattaatt 265  Q
    |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||| || |||||||||| ||||||||||||    
T  2062 tacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaatt 1964  T
Q  266 ttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctct 365  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  1963 ttcagaaattatatattatgactattgaaagataatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctct 1864  T
Q  366 cttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||| ||||    
T  1863 cttggtcttctctccttgccttagctt 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 34 - 360
Target Start/End: Original strand, 9108 - 9434
Alignment:
Q  34 acatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaac 133  Q
    ||||||| |||| |||||||||||| ||||||| |||| || ||||||| || ||||||||||||||||||||||| || |||||  |||||  ||||||    
T  9108 acatcaacaacaacaattcagcccattcaagcaatcatacaaaacttcccaa-ttcatccatcatattctattttcgttccaattctgatcacaatcaac 9206  T
Q  134 aacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttccca 232  Q
    ||||| |||| |||||||||||||| |||  || |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||    
T  9207 aacatagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-ccca 9305  T
Q  233 attttacctt-aagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 331  Q
    ||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||     
T  9306 attttacttttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgtagagacag 9405  T
Q  332 atagcacagcaaatcag-ttcctaagttct 360  Q
    | | |||||||| |||| ||||||||||||    
T  9406 aga-cacagcaattcagtttcctaagttct 9434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 16370 - 16023
Alignment:
Q  10 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctatttt- 108  Q
    ||||||||||| ||||||||   ||||| || |||| |||||||   ||||||| |||||||||||||||||||||| || || |||||||||||||||     
T  16370 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaa-cattcattcagaacttccaaaactcttctatcatattctattttt 16272  T
Q  109 catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    || |||||||| ||||||||| ||||| || |||||  |||||||||||||||| |||||||||||| || |||||||||||| ||| |||||||  |||    
T  16271 cacttcaattatgatcaatatgaacaatatagattagaaaatcatactaatcat-caaatacaacatcatgaacctgattcttgcacattttcttcaaaa 16173  T
Q  209 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaatttt-cagaaattacatattatgactattgaaagataatcccacc 307  Q
    |||||||||||||| | || || | ||||| ||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||    
T  16172 tcatcattaaccctaaatt-ccaatttttatcttaaaaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacc 16074  T
Q  308 cttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 358  Q
    ||||||||||||||| |   | || || ||||||||||||| |||||||||    
T  16073 cttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 16023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 332
Target Start/End: Original strand, 1129 - 1425
Alignment:
Q  34 acatcaagaacatcaattcagcccaatcaagcattcattcagaa-cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaa 132  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||| |||||||| ||||  ||| | || ||||||||||  |||||| |||||| | |||    
T  1129 acatcaacaacaacaattcagcccaatcaagcattcatacagaaacttccaaa-ttcacacataacatgctattttcatc-caattatgatcaacaacaa 1226  T
Q  133 caacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttccca 232  Q
    ||| |  ||||| ||||||||||||||||| ||| || |||||| ||||||||| |||||| | |||||||  ||||||||||||  ||| |||||||||    
T  1227 caatacagattaggaaatcatactaatcat-caattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttccca 1325  T
Q  233 attttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    |||||||||||||||||||| ||||| ||||||||||||||  | ||||||  |||||||||||  ||||||||||||||||||||||||||||||||||    
T  1326 attttaccttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgcaaagacaaa 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 91499 - 91144
Alignment:
Q  21 gaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaatta 119  Q
    ||||||||| | |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  ||||||    
T  91499 gaacagcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caatta 91401  T
Q  120 cgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaac 219  Q
     |||||| |||| ||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||    
T  91400 tgatcaacatcaccaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaac 91302  T
Q  220 ccttattttcccaatttt---accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||| |||| |||||||||   ||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||||||||| |||||||||||||||||    
T  91301 cctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttacctta 91203  T
Q  317 gaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctc 377  Q
    |||||||||||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  91202 gaattgcaaagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 91144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 97225 - 96870
Alignment:
Q  21 gaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaatta 119  Q
    ||||||||| | |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  ||||||    
T  97225 gaacagcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caatta 97127  T
Q  120 cgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaac 219  Q
     |||||| |||| ||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||    
T  97126 tgatcaacatcaccaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaac 97028  T
Q  220 ccttattttcccaatttt---accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||| |||| |||||||||   ||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||||||||| |||||||||||||||||    
T  97027 cctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttacctta 96929  T
Q  317 gaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctc 377  Q
    |||||||||||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  96928 gaattgcaaagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 96870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 111885 - 111938
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  111885 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 10222 - 10364
Alignment:
Q  245 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 344  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| | ||||||| |||||||||||    
T  10222 gaacaattcaattgattaattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgtagagacaaaaagcacagcaaa 10321  T
Q  345 tcagttcctaagttcttctctcttggtcttctctccttgcctt 387  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  10322 tccgttcctaagttcttctctcttggtcttctctccttgcctt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 493086 - 492953
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 357  Q
    ||||||||||||||||||| | |||| || ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  493086 gattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagt 492988  T
Q  358 tcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||||| ||||    
T  492987 tcttctctcttggtcttctctccttgccttagctt 492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 10250 - 10125
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 361  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  10250 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 10151  T
Q  362 ctctcttggtcttctctccttgcctt 387  Q
    ||||||||||||||||||||||||||    
T  10150 ctctcttggtcttctctccttgcctt 10125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 11111 - 11042
Alignment:
Q  289 attgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagtt 358  Q
    |||||| ||||||||||||||||||||||||||  |   | || || ||||||||||||| |||||||||    
T  11111 attgaaggataatcccacccttaccttagaattttaggaagaattaacacagcaaatcagctcctaagtt 11042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 1580 - 1455
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttctt 361  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  1580 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 1481  T
Q  362 ctctcttggtcttctctccttgcctt 387  Q
    ||||||||||||||||||||||||||    
T  1480 ctctcttggtcttctctccttgcctt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 3461 - 3327
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagt 357  Q
    ||||||||||||||||||| ||||||     |||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  3461 gattaattttcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattgcaaagacaaaaagcacggcaaatccgttcctaagt 3362  T
Q  358 tcttctctcttggtcttctctccttgcctttgctt 392  Q
    ||| |||||||||||||||||| ||||||| ||||    
T  3361 tctcctctcttggtcttctctcgttgccttagctt 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 5916 - 5781
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaa 355  Q
    ||||||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||  | | |||||| |||| |||||  |    
T  5916 gattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcccta 5818  T
Q  356 gttcttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5817 gttcttctctcttggtcttctctccttgccttagctt 5781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 386
Target Start/End: Original strand, 6 - 125
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttct 363  Q
    ||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||| ||| |||||||| ||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgcaaagataa--agtgcagcaagtcaattcctaagctcttct 103  T
Q  364 ctcttggtcttctctccttgcct 386  Q
    |||||||||||||| ||||||||    
T  104 ctcttggtcttctc-ccttgcct 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 12753 - 13019
Alignment:
Q  65 cattcattcagaac-ttccaaa-attcatccatcatattctatttt-catttcaatt--acgatcaatatcaacaacatggattaagaaatcatactaat 159  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||| || | ||| |  | ||||||||||||||  || ||||| ||||||||||||||    
T  12753 cattcattcagaaccttccaaccattcatctatcatattctatttttcactccaaattaatgatcaatatcaacattatagattaggaaatcatactaat 12852  T
Q  160 cattcaaatacaacattataaacct-gattctt-acaccttttctttcaaatcat-cattaacccttattttccc--aattttacc-ttaagaacagttt 253  Q
    ||| ||||||||||||||||||||| ||||||| |||| ||| |||   |||||| |||||||||| | ||||||  | ||||||| ||||||||||||     
T  12853 catacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaatttttacctttaagaacagtta 12952  T
Q  254 aa---ttgattaa-ttttcagaaattacatattatgactattg-aaagataatcccacccttacctt 315  Q
    ||   | |||||| |||| |||||| | ||||||  ||||||| |||||||||||||||||||||||    
T  12953 aaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 111686 - 111817
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttc 359  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||| |||||||  | | |||||| ||||  |||   |||||    
T  111686 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 111784  T
Q  360 ttctctcttggtcttctctccttgcctttgctt 392  Q
    |||||||||||||||||||||||||||| ||||    
T  111785 ttctctcttggtcttctctccttgccttagctt 111817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 11905 - 11850
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  11905 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11850  T

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Target: scaffold0249 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 13947 - 13879
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 332  Q
    ||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 13879  T

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Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 23628 - 23562
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 324  Q
    ||||||||||||||||||| | |||||||  ||| ||||||||||||||||||||||||||||||||    
T  23628 gattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgca 23562  T

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Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 23748 - 23680
Alignment:
Q  140 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 208  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||||||||||| |||||||||||||    
T  23748 gattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaa 23680  T

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Target: scaffold0453 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 10609 - 10546
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaatt 321  Q
    ||||||||||||||||||| | |||| ||  |||||||||||||||||| ||||||||||||||    
T  10609 gattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttagaatt 10546  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 73281 - 73365
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaatc 346  Q
    |||||||||||| |||||| | |||||||  |||||||||||||||||||||||||| | ||||||    | |||||||||||||||||    
T  73281 gattaattttcataaattatacattatgatcattgaaagataatcccacccttacctcataattgc----agaaatagcacagcaaatc 73365  T

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Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 392
Target Start/End: Complemental strand, 45326 - 45198
Alignment:
Q  265 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--atagcacagcaaatcagttcctaagttcttc 362  Q
    |||||| ||||| | ||||||| |||||| ||||| || ||||||||||||||| |||| |||||||  | | |||||| ||||  |||   ||||||||    
T  45326 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagatttgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 45228  T
Q  363 tctcttggtcttctctccttgcctttgctt 392  Q
    ||||||||||||||||||| ||||| ||||    
T  45227 tctcttggtcttctctcctagccttagctt 45198  T

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Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 40586 - 40475
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttct 360  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || ||||||||||||||| ||||  ||| | || ||||||| ||||| ||||||| | |||    
T  40586 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgc--agaaagattgcacagcaaaatcggttcctaggctct 40489  T
Q  361 tctctcttggtctt 374  Q
    ||||||||| ||||    
T  40488 tctctcttgttctt 40475  T

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Target: scaffold2054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 717 - 770
Alignment:
Q  264 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||| |||||| ||  |||||||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 770  T

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Target: scaffold0235 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 22646 - 22536
Alignment:
Q  263 attttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc-aaatcagttcctaagttctt 361  Q
    |||||||||||||| ||| ||||| |||||| ||||| || |||||||||||| || ||||  ||| | || ||||||| ||||| ||||||| | ||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgc--agaaatattgcacagcaaaatcggttcctaggctctt 22549  T
Q  362 ctctcttggtctt 374  Q
    |||||||||||||    
T  22548 ctctcttggtctt 22536  T

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Target: scaffold1461 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 1543 - 1485
Alignment:
Q  258 gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    |||||||||||||||||| ||||||| ||  |||| ||||||||| |||||||||||||    
T  1543 gattaattttcagaaattgcatattaagatcattgcaagataatctcacccttacctta 1485  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 135474 - 135530
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 318  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||||    
T  135474 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 135530  T

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Target: scaffold0924 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 805 - 750
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  805 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 750  T

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Target: scaffold0247 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 11342 - 11397
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  11342 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11397  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 30858 - 30913
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 317  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  30858 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 30913  T

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Target: scaffold0317 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 1367 - 1441
Alignment:
Q  243 aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||| ||||||| ||| |||||||| |||||| |||| ||||  ||||||||||| || |||||||||||||    
T  1367 aagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0222 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 16821 - 16875
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  16821 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 116897 - 116951
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 316  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  116897 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 3962 - 3921
Alignment:
Q  28 aactaaacatcaagaacatcaattcagcccaatcaagcattc 69  Q
    ||||||||||||| |||| |||||||||||| ||||||||||    
T  3962 aactaaacatcaacaacaacaattcagcccattcaagcattc 3921  T

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Target: scaffold0310 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 17644 - 17700
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 318  Q
    ||||||||||||||| | ||||||  |||||| ||||| || |||||||||||||||    
T  17644 aattttcagaaattatacattatggttattgagagatagtctcacccttaccttaga 17700  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 14450 - 14398
Alignment:
Q  262 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 314  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  14450 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

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