View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11934_low_6 (Length: 209)

Name: NF11934_low_6
Description: NF11934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11934_low_6
NF11934_low_6
[»] chr7 (6 HSPs)
chr7 (1-191)||(21111467-21111657)
chr7 (1-193)||(21123299-21123491)
chr7 (1-191)||(18658589-18658779)
chr7 (1-193)||(21130427-21130619)
chr7 (1-127)||(21098653-21098779)
chr7 (1-127)||(21108272-21108398)
[»] chr4 (1 HSPs)
chr4 (1-193)||(39132117-39132309)
[»] chr3 (9 HSPs)
chr3 (5-128)||(26675468-26675591)
chr3 (5-127)||(26744079-26744201)
chr3 (5-189)||(26698680-26698858)
chr3 (5-189)||(26733843-26734021)
chr3 (5-189)||(26737068-26737246)
chr3 (5-189)||(26713832-26714010)
chr3 (11-79)||(26690539-26690607)
chr3 (11-79)||(26694700-26694768)
chr3 (11-79)||(26731850-26731918)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 21111467 - 21111657
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21111467 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaactctagctgttcctaaagca 21111566  T
Q  101 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111567 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaa 21111657  T

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Target: chr7; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 21123299 - 21123491
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  21123299 agaatcaagaagtatattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagca 21123398  T
Q  101 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaatt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123399 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaatt 21123491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 18658589 - 18658779
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||  |||||||||||||||||    
T  18658589 agaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaaagca 18658688  T
Q  101 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaa 191  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18658689 atatcataccttttactccagtcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaa 18658779  T

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Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 21130427 - 21130619
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| || | ||| ||||||||||||||||||    
T  21130427 agaatcaagaagtatattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagca 21130526  T
Q  101 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaatt 193  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  21130527 atatcataccttttagtccaatcaagtgtgttggttttggatgaaagattttccgctaaagaaccattttccatgtactcatataccaaaatt 21130619  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 21098779 - 21098653
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||| || | ||| ||  || ||  |||||||    
T  21098779 agaatcaagaagtatattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgtagatatgctaaaactcttcctattgataaagca 21098680  T
Q  101 atatcataccttttactccaatcaagt 127  Q
    || |  |||||||||||||||||||||    
T  21098679 attttgtaccttttactccaatcaagt 21098653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 21108398 - 21108272
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||| || | |||||||||||||||||| || | ||| || ||| ||  |||| ||    
T  21108398 agaatcaagaagtatgttttgtggctttatatcacaatgcaaaatccactccaaacattcttcatgtagatatgctaaaactcttgctattgataaaaca 21108299  T
Q  101 atatcataccttttactccaatcaagt 127  Q
    || |  |||||||||||||||||||||    
T  21108298 attttgtaccttttactccaatcaagt 21108272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 39132309 - 39132117
Alignment:
Q  1 agaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagca 100  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||| || || ||||||||||||||||||    
T  39132309 agaatcaagaagtatattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagctaggactctagctgttcctaaagca 39132210  T
Q  101 atatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaatt 193  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||    
T  39132209 atatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattcttcatgtactcatataccaaaatt 39132117  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 26675468 - 26675591
Alignment:
Q  5 tcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagcaatat 104  Q
    |||| |||||| |||||||||||||||||||||||||| ||||| || | |||||||||||||| ||| |||||| |  | || ||||||| |||||| |    
T  26675468 tcaataagtatgttttgaggctttatatcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaagagcctttgcggttcctagagcaatgt 26675567  T
Q  105 cataccttttactccaatcaagtg 128  Q
     |||||| |||| |||||||||||    
T  26675568 tatacctcttaccccaatcaagtg 26675591  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 26744079 - 26744201
Alignment:
Q  5 tcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagcaatat 104  Q
    |||| |||||| ||||| |||||||||||||||||||| ||||| || | ||||||||| |||| |||||||||  |  | || ||||| | |||||| |    
T  26744079 tcaacaagtatgttttgcggctttatatcacaatgcaaaatccactccaaacattcttcgtgtaaataagcaaggccctttgcagttcccatagcaatgt 26744178  T
Q  105 cataccttttactccaatcaagt 127  Q
     ||||||||||||||||||||||    
T  26744179 tataccttttactccaatcaagt 26744201  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 26698680 - 26698858
Alignment:
Q  5 tcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagcaatat 104  Q
    |||| |||||| ||||| ||||||||||| |||||||| ||||| || | ||| ||||| |||| |||||||||| |  | || ||||| | |||||| |    
T  26698680 tcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgtgtaaataagcaagaccctttgcagttcccatagcaatgt 26698779  T
Q  105 cataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaa 189  Q
     ||||||||||| ||||||||||   | | ||   ||||| ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26698780 tataccttttaccccaatcaagt---tcactt---gatgagagattatcagctaaagtaccattttccatgtactcataaaccaa 26698858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 26733843 - 26734021
Alignment:
Q  5 tcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagcaatat 104  Q
    |||| |||||| ||||| ||||||||||| |||||||| ||||| || | ||| ||||| |||| |||||||||| |  | || ||||| | |||||| |    
T  26733843 tcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgtgtaaataagcaagaccctttgcagttcccatagcaatgt 26733942  T
Q  105 cataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaa 189  Q
     ||||||||||| ||||||||||   | | ||   ||||| ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26733943 tataccttttaccccaatcaagt---tcactt---gatgagagattatcagctaaagtaccattttccatgtactcataaaccaa 26734021  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 26737068 - 26737246
Alignment:
Q  5 tcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagcaatat 104  Q
    |||| |||||| ||||| ||||||||||| |||||||| ||||| || | ||| |||||||||| ||||||||||    | || ||||||| |||||||     
T  26737068 tcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagcaagacattttgcagttcctatagcaatac 26737167  T
Q  105 cataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaa 189  Q
    |||| || || | ||||||||||   | |   || ||||| ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26737168 catatctctttccccaatcaagt---tca---tttgatgagagattatcagctaaagtaccattttccatgtactcataaaccaa 26737246  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 26713832 - 26714010
Alignment:
Q  5 tcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaacactagctgttcctaaagcaatat 104  Q
    |||| |||||| ||||| ||||||||||| |||||||| ||||| || | ||| |||||||||| ||||||||||    | || ||||||| |||||||     
T  26713832 tcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagcaagacattttgcagttcctatagcaatac 26713931  T
Q  105 cataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaa 189  Q
    |||| || || | ||||||||||   | |   || ||| | ||||| ||||||||||  |||||||||||||||||||| |||||    
T  26713932 catatctctttccccaatcaagt---tca---tttgataagagattatcagctaaagtaccattttccatgtactcataaaccaa 26714010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 26690607 - 26690539
Alignment:
Q  11 agtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaaga 79  Q
    ||||| ||||| |||||||| ||||||||||| ||||| || | |||||||||||||| ||| ||||||    
T  26690607 agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaaga 26690539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 26694768 - 26694700
Alignment:
Q  11 agtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaaga 79  Q
    ||||| ||||| |||||||| ||||||||||| ||||| || | |||||||||||||| ||| ||||||    
T  26694768 agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaataggcaaga 26694700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 26731918 - 26731850
Alignment:
Q  11 agtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaaga 79  Q
    ||||| ||||| |||||||| ||||||||||| ||||| || | |||||||||||||| ||| ||||||    
T  26731918 agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaaga 26731850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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