View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11934_low_7 (Length: 208)
Name: NF11934_low_7
Description: NF11934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11934_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 18219339 - 18219162
Alignment:
| Q |
16 |
atgtcagaatcattaacaccaccagcgttattgctaggaccaacatcattgacagaaagcattggacaagagacaagggaggaagagaaaggtaataatg |
115 |
Q |
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| T |
18219339 |
atgtcagaatcattaacaccaccagtgttattgcttggaccaacatcattgacagaaaacattgga---------------gaagagaaaggtaataatg |
18219255 |
T |
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| Q |
116 |
tcnnnnnnncaaaatcagaagacacacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggctgaaaagtggtt |
208 |
Q |
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| T |
18219254 |
tcaaaaaaacaaaatcagcagacacacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggctgaaaagtggtt |
18219162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 43011226 - 43011096
Alignment:
| Q |
33 |
accaccagcgttattgctaggaccaacatcattgacagaaagcattggacaagagacaagggaggaagagaaaggtaataatgtcnnnnnnncaaaatca |
132 |
Q |
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| T |
43011226 |
accaccagcgtcattgcttggaccaacatcattgacagaaaacattggacatgagacaagggaggaagagaaaggtactaacgtgaacaaaacaaaatca |
43011127 |
T |
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| Q |
133 |
gaagacacacaaatggtagtaggaagcagag |
163 |
Q |
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| T |
43011126 |
gcagacacacaaatggtagtaggaagcagag |
43011096 |
T |
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