View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11935_high_6 (Length: 428)
Name: NF11935_high_6
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11935_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 44912798 - 44913204
Alignment:
| Q |
1 |
actatggatattcaaggtgactctgttgctttacacagtgttaaaactgttcctggaaacaatggtgaagatgagaaacttgttttgcttggtaaaggaa |
100 |
Q |
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| T |
44912798 |
actatggatattcaaggtgactctgttgctttacacagtgttaaaactgttcctggaaacaatggtgaagatgagaaacttgttttgcttggtaaaggaa |
44912897 |
T |
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| Q |
101 |
tggagaagaaaagatcttttggtgcttcttttgttagaactgcttcgattcgtatgaaacatgtttctcaggagttgaagaaattaacttctttttcgaa |
200 |
Q |
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| T |
44912898 |
tggagaagaaaagatcttttggtgcttcttttgttagaactgcttcgattcgtatgaaacatgtttctcaggagttgaagaaattaacttctttttcgaa |
44912997 |
T |
|
| Q |
201 |
acaagttggacctcagaaagtttatgataggactaagtctgcagcttctcatgctcttagaggactcaagtttatcaataataagactgatgttggatgg |
300 |
Q |
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| T |
44912998 |
acaagttggacctcagaaagtttatgataggactaagtctgcagcttctcatgctcttagaggactcaagtttatcaataataagactgatgttggatgg |
44913097 |
T |
|
| Q |
301 |
tttgaggttgaaaagcagtttgatattctttcaactcatgatgcttttcttcatcgctctctctttgccaaatgcataggtcagtatcgtgtgttcggtg |
400 |
Q |
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| T |
44913098 |
tttgaggttgaaaagcagtttgatattctttcaactcatgatgcttttcttcatcgctctctctttgccaaatgcataggtcagtatcgtgtgttcggtg |
44913197 |
T |
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| Q |
401 |
tttgtgt |
407 |
Q |
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| T |
44913198 |
tttgtgt |
44913204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 44897293 - 44897436
Alignment:
| Q |
67 |
gaagatgagaaacttgttttgcttggtaaaggaatggagaagaaaagatcttttggtgcttcttttgttagaactgcttcgattcgtatgaaacatgttt |
166 |
Q |
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| T |
44897293 |
gaagatgagaaacttgatttgcttggcaaaggaatggagaagaaaaggtcttttggtgattcgtttgtgagaactgcttcaaatcatctgaggaaagttt |
44897392 |
T |
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| Q |
167 |
ctcaggagttgaagaaattaacttctttttcgaaacaagttgga |
210 |
Q |
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| T |
44897393 |
ctcaggagttgactcgtttaacttctttttcaaaacaagttgga |
44897436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 44882832 - 44882886
Alignment:
| Q |
223 |
tatgataggactaagtctgcagcttctcatgctcttagaggactcaagtttatca |
277 |
Q |
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| T |
44882832 |
tatgataggactacgtctgcagcttctaatgctctcaaaggacttaactttatca |
44882886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 39980990 - 39981036
Alignment:
| Q |
4 |
atggatattcaaggtgactctgttgctttacacagtgttaaaactgt |
50 |
Q |
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| T |
39980990 |
atggacattcaaggtgactctgttgccttacacagtgtgaaaactgt |
39981036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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