View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11935_low_11 (Length: 264)
Name: NF11935_low_11
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11935_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 38149788 - 38149549
Alignment:
| Q |
18 |
gaacactaccattgcctggctgaatcaagactctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccacc |
117 |
Q |
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| T |
38149788 |
gaacactaccattgcctggctgaatcaagactctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccacc |
38149689 |
T |
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| Q |
118 |
ttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccg |
217 |
Q |
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| T |
38149688 |
ttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccg |
38149589 |
T |
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| Q |
218 |
cctcctcttattgcccaaaataggtcttctccctttgctt |
257 |
Q |
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| T |
38149588 |
cctcctcttattgcccaaaataggtcttctcccattgctt |
38149549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 38145952 - 38145748
Alignment:
| Q |
46 |
gactctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaa |
145 |
Q |
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| T |
38145952 |
gactctaatgaagagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaa |
38145853 |
T |
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| Q |
146 |
actgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtctt |
245 |
Q |
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| T |
38145852 |
actgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcct |
38145753 |
T |
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| Q |
246 |
ctccc |
250 |
Q |
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| T |
38145752 |
ctccc |
38145748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 11786869 - 11787016
Alignment:
| Q |
47 |
actctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaa |
146 |
Q |
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| T |
11786869 |
actctcataaagagattttcatcaatagttggtgctacttcttgccatttatgaacaatcttacttgcatcttgttctaagcttttggtaacggtaaaaa |
11786968 |
T |
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| Q |
147 |
ctgtcacagtttttggcacaggaactaatttgatcttccaccagagaa |
194 |
Q |
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| T |
11786969 |
ccgtcacggtttttggaacaggaacaagttttatcttccaccaaagaa |
11787016 |
T |
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