View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11935_low_2 (Length: 695)

Name: NF11935_low_2
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11935_low_2
NF11935_low_2
[»] chr4 (3 HSPs)
chr4 (1-686)||(38148894-38149579)
chr4 (4-112)||(38145660-38145768)
chr4 (4-80)||(38125569-38125645)


Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Complemental strand, 38149579 - 38148894
Alignment:
Q  1 attgcccaaaataggtcttctcccattgctttcctgtcaagaatttttccattagcatcaacaattcgagcgtcaacaacgttgtctacaccaaggccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38149579 attgcccaaaataggtcttctcccattgctttcctgtcaagaatttttccattagcatcaacaattcgagcgtcaacaacgttgtctacaccaaggccat 38149480  T
Q  101 actttctcatcatagaaccgtaagcgcctcccgcgatgaggccaccaatgcctaaagatgtacaaaggcctgcagggaagccatgaactgaacttttagc 200  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38149479 actttctcatcatagaaccgtaagctcctcccgtgatgaggccaccgatgcctaaagatgtacaaaggcctgcagggaagccatgaactgaacttttcgc 38149380  T
Q  201 ggaaattttatggtagacttcaccaatagttgcgcctgcttgaatccaagccatgttatgtggaatatcaacgtttactgcacgtagtttagccaggtct 300  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38149379 ggaaattttgtagtagacttcaccaatagttgcgcctgcttgaatccaagccgtgttatgtggaatatcaacgtttactgcacgtagtttagccaggtct 38149280  T
Q  301 aggatcataaacggtttctcgataagagaaacataagaaagaccttcatagtcgtgccctccgctgcgtattctcatatgaataccatgttgttttgcac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38149279 aggatcataaacggtttctcgataagagaaacataagaaagaccttcatagtcgtgccctccgctgcgtattctcatatgaataccatgttgttttgcac 38149180  T
Q  401 atatcacagctgcttggacttgtgaatcatggaatggtgtgaatatgaaatctggttttggcactgaaggcaataaatacctcaggttttgagcagtgga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38149179 atatcacagctgcttggacttgtgaatcatggaatggtgtgaatatgaaatctggttttggcactgaaggcaataaatacctcaggttttgagcagtgga 38149080  T
Q  501 ttcaaggattgtagtgtaggacttattggttgaggtgtagattgaagagggaaattggtttggaatttgagcatgaagtgataggcaattattgaaagtt 600  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38149079 ttcaaggattgaagtgtaggacttattggttgaggtgtagattgaagagggaaattggtttggaatttgagcatgaagtgataggcaattattgaaagtt 38148980  T
Q  601 tcttcaattgaaactgaagtggaaagcggaacagatagcagaacaacaaaagttgctaggagggacatcatagactgcatgatgtc 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38148979 tcttcaattgaaactgaagtggaaagcggaacagatagcagaacaacaaaagttgctaggagggacatcatagactgcatgatgtc 38148894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 38145768 - 38145660
Alignment:
Q  4 gcccaaaataggtcttctcccattgctttcctgtcaagaatttttccattagcatcaacaattcgagcgtcaacaacgttgtctacaccaaggccatact 103  Q
    ||||||||||| || |||||||| ||||| ||||||||||| || || || |||||||| |||||||| || |  || || || |||||||| ||||| |    
T  38145768 gcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaacaccaagaccatatt 38145669  T
Q  104 ttctcatca 112  Q
    |||||||||    
T  38145668 ttctcatca 38145660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 38125645 - 38125569
Alignment:
Q  4 gcccaaaataggtcttctcccattgctttcctgtcaagaatttttccattagcatcaacaattcgagcgtcaacaac 80  Q
    |||||||| || ||||| ||||||| |||||| ||||||||  | |||||| |||||||||||  ||| ||||||||    
T  38125645 gcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaacaatttcagcatcaacaac 38125569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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