View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11935_low_3 (Length: 622)
Name: NF11935_low_3
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11935_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 3599054 - 3599665
Alignment:
| Q |
1 |
tcaaagttaggcactttttaattgttcaccctgaagtgttacggttcataaacttattgannnnnnnnaataatgaactaccaaacttatgaactcaatg |
100 |
Q |
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| T |
3599054 |
tcaaatttaggcattttttaattgttcaccctgaagtgttacggttcataaatttattgattttttttaataatgaactaccaaacttatgaattcgatg |
3599153 |
T |
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| Q |
101 |
tgctcatatattccatgtttcccttctgaatttatcagacgctgtcatcttctgatctacgtgatccttccatttctgctcttatagcggccaaaatgaa |
200 |
Q |
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| T |
3599154 |
tgctcatatattcaatgtttcccttctgaatttatcagacgctgtcagcttctgatctacgtgatccttccatttctgctcttatagcggccaaaatgaa |
3599253 |
T |
|
| Q |
201 |
ggagttccatgatctagatatgcctggtgaaaagaaagccaatctttggcctacattgaggtatgtacataataagaataag------aatttagttgtg |
294 |
Q |
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| T |
3599254 |
ggagttccatgatctagatatgcctggtgaaaagaaagccaatctttggcctacattgaggtatgtacataataagaataagagtaagaatttagttgtg |
3599353 |
T |
|
| Q |
295 |
tttaatttgtttaaaaaatttacttaaatagttaagtttcaacctcaacatcatttctcagcctattttatttcaatgcttcagaaattggcttagtgag |
394 |
Q |
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| T |
3599354 |
tttaatttgtttaaaaaatttacttaaatagttaagtttcaacctcaacatcatttctcagcctattttatttcaatgcttcagaaattggcttagtgag |
3599453 |
T |
|
| Q |
395 |
gccaaacgtctttcttctccaaaagaagtcgaagctttttatttggacacggtcgacaaggaaatctctattttggaaaaggagctgtcaggctcgcatc |
494 |
Q |
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| T |
3599454 |
gccaaacgtttgtcttctccaaaagaagtcgaagctttttatttggacacggtcgacaaggaaatctctattttggaaaaggagctgtcaggctcgcatc |
3599553 |
T |
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| Q |
495 |
aacggatagggttttgccacaatgatttgcaatatggtaacataatgcttgacgaagagaccaactctgtgaccataatagtgagtttctctttgtacta |
594 |
Q |
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| T |
3599554 |
aacggatagggttttgccacaatgatttgcaatatggtaacataatgcttgacgaagagaccaactctgtgaccataatagtgagtttctctttgtacta |
3599653 |
T |
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| Q |
595 |
gctagtaaaatc |
606 |
Q |
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| T |
3599654 |
gctagtaaaatc |
3599665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 493 - 588
Target Start/End: Complemental strand, 15546083 - 15545988
Alignment:
| Q |
493 |
tcaacggatagggttttgccacaatgatttgcaatatggtaacataatgcttgacgaagagaccaactctgtgaccataatagtgagtttctcttt |
588 |
Q |
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| T |
15546083 |
tcaacgcatagggttttgccacaatgatttacaatatggtaacatcatgcttgatgaagtaacaaattctgtgaccataatagtgagtttctcttt |
15545988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 15546411 - 15546346
Alignment:
| Q |
163 |
gatccttccatttctgctcttatagcggccaaaatgaaggagttccatgatctagatatgcctggt |
228 |
Q |
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| T |
15546411 |
gatccatctatttctgctcttatagcctccaaaatgaaggagttccatgatcttgacatgcctggt |
15546346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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