View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11935_low_4 (Length: 531)
Name: NF11935_low_4
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11935_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 528
Target Start/End: Complemental strand, 33413596 - 33413061
Alignment:
| Q |
12 |
acaattaacaaatcatatagattttagaagaatcttatagctaacagtggcaaaattgtctagtagtatttgcagcatgctcaaagttttggataagttt |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33413596 |
acaattaacaaatcatatagattatagaagaatcttatagctaacagtggcaaaattgtctagtagtatttgcagcatgctccaagttttggataagttt |
33413497 |
T |
|
| Q |
112 |
taagtgaaaaagatggataatactaatagggatgtgtgcaatattaattatattgtttatcaggtcaaagtcaatctggtttaactattgcataatcaaa |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
33413496 |
taagtgaaaaagatggataatactaataggtatgtgtgcaatattaattat--tgtttttcaagtcaaagtcaatctcgtttaactattgcatcatcaaa |
33413399 |
T |
|
| Q |
212 |
ttttacc--------------------acggacactcctcaaattatgagtattcaggtgtcaccgacacaacactgacactta-taattattacaatga |
290 |
Q |
| |
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||||||| ||| |||||||||| |||||| ||||| |||||||||||||||||||| ||||||| | || |||||| ||| |
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| T |
33413398 |
ttttaccgaccctacaagttataaagcacgaacactcctcagattatgcgtattttggtgtcaccgacacaacactaacacttaattataattacactga |
33413299 |
T |
|
| Q |
291 |
attatgtaatttaattgtttgatctgtattggaacatgcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgcca |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413298 |
attatgtaatttaattgtttgatctgtattggaacatgcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgcca |
33413199 |
T |
|
| Q |
391 |
tgaattagatgtaacaaaatgcaaaaaactctctacattacaattagctgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaa |
490 |
Q |
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| T |
33413198 |
tgaattagatgtaacaaaatgcaaaaaactctctacattacaattagctgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaa |
33413099 |
T |
|
| Q |
491 |
cccaacatctcaaccattggtgcagaccaatttgatga |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33413098 |
cccaacatctcaaccattggtgcagaccaatttgatga |
33413061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 328 - 530
Target Start/End: Original strand, 15728508 - 15728710
Alignment:
| Q |
328 |
gcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctaca |
427 |
Q |
| |
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|||||| |||||| ||||||||||| |||| || ||||| | | |||| |||||||| || |||||| | ||||| ||||||||||| || |||||| |
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| T |
15728508 |
gcagggcatgtctatgcttacattatcagtttctcttccaagcctaaaaccacctgagtgtcatgaaatggatgtgacaaaatgcaaggaagcttctaca |
15728607 |
T |
|
| Q |
428 |
ttacaattagctgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatg |
527 |
Q |
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| T |
15728608 |
ttacagctagttgtgttctatggtgcactctacattctagcagtgggaacaggtggaacaaaacctaacatttccactattggtgctgatcaatttgatg |
15728707 |
T |
|
| Q |
528 |
agt |
530 |
Q |
| |
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||| |
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|
| T |
15728708 |
agt |
15728710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 528
Target Start/End: Original strand, 15764948 - 15765148
Alignment:
| Q |
328 |
gcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctaca |
427 |
Q |
| |
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||||||||||| | |||||||| || |||| || ||||| | | ||||||||||| ||||||||||| | ||||| ||||||||||| || || ||| |
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| T |
15764948 |
gcagggtatgtgtctgcttacactatcagtttcccttccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaaggaagcttccaca |
15765047 |
T |
|
| Q |
428 |
ttacaattagctgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatg |
527 |
Q |
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| T |
15765048 |
caaacactagttgtgttctatactgcactctacattttagcagtgggaacaggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatg |
15765147 |
T |
|
| Q |
528 |
a |
528 |
Q |
| |
|
| |
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|
| T |
15765148 |
a |
15765148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 328 - 530
Target Start/End: Original strand, 15736282 - 15736484
Alignment:
| Q |
328 |
gcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctaca |
427 |
Q |
| |
|
||||||||||||| |||||||| || |||| || ||||| | | |||| |||||||| || |||||| | ||||| ||||||||||| || || ||| |
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| T |
15736282 |
gcagggtatgtctatgcttacactatcagtttctcttccaagcctaaaaccacctgagtgtcatgaaatggatgtgacaaaatgcaaggaagcttccaca |
15736381 |
T |
|
| Q |
428 |
ttacaattagctgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatg |
527 |
Q |
| |
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|||| ||| |||||||||||||||||| |||||||||||| | |||||||||||||| || | ||||| || || |||||||| || |||||||||| |
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| T |
15736382 |
ctacagctagttgtgttctatggtgcactctacactctagcagtgggaacaggtggaacaaaggctaacatttccactattggtgctgatcaatttgatg |
15736481 |
T |
|
| Q |
528 |
agt |
530 |
Q |
| |
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||| |
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|
| T |
15736482 |
agt |
15736484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 525
Target Start/End: Original strand, 15754375 - 15754461
Alignment:
| Q |
439 |
tgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttga |
525 |
Q |
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||||||||||| |||||| |||| | ||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
15754375 |
tgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttga |
15754461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 528
Target Start/End: Original strand, 15778657 - 15778813
Alignment:
| Q |
372 |
taaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctacattacaattagctgtgttctatggtgcactttacactctagcaat |
471 |
Q |
| |
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||||||||||||| ||||||||| | ||||| ||||| || ||| || | ||| |||| ||| ||||||||||| ||| || |||| | ||||| | |
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| T |
15778657 |
taaagccacctgagtgccatgaaatggatgtgacaaagtgtaaagaagctaccacactacagctagttgtgttctatgttgccctctacattatagcagt |
15778756 |
T |
|
| Q |
472 |
aggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatga |
528 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| |
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|
| T |
15778757 |
gggaacaggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatga |
15778813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 530
Target Start/End: Complemental strand, 39261291 - 39261237
Alignment:
| Q |
476 |
acaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgagt |
530 |
Q |
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||||| ||||| || |||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
39261291 |
acagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagt |
39261237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 39239877 - 39239820
Alignment:
| Q |
471 |
taggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatga |
528 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || || || || |||||||||||||| |
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|
| T |
39239877 |
taggcacaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatga |
39239820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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