View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11935_low_7 (Length: 373)
Name: NF11935_low_7
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11935_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 3065622 - 3065980
Alignment:
| Q |
1 |
ttgtttcaaattcatcatttccaagctattgatctacaaatgcagtcaaaatattttaaattggtatatcatctggccaagtgaagcagaacttgaccac |
100 |
Q |
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| T |
3065622 |
ttgtttcaaattcatcatttccaagctattgatctacaaatgcagtcaaaatattttaaattagtatatcatctggccaagtgaagcagaacttgaccac |
3065721 |
T |
|
| Q |
101 |
tttaatgtggttgaagaaaataaagcacatccacaattataaatttgcagaagctgttatatccataaacaccactacctaaactaacaatatattacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3065722 |
tttaatgtggttgaagaaaataaagcacatccacaattataaatttgcagaagctgttatatccataaacaccactacctaaactaacaatatattacac |
3065821 |
T |
|
| Q |
201 |
attatcaggtttagatcacactatgatccaaccttcactctcagtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3065822 |
attatcaggtttagatcacactatgatccaaccttcactctcagtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgct |
3065921 |
T |
|
| Q |
301 |
ctaagttaaaaatgtgtgtttgaaactttactctctttttcttacacattgtatttctc |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3065922 |
ctaagttaaaaatgtgtgtttgaaactttactctctttttcttacacattgtatttctc |
3065980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 146 - 359
Target Start/End: Original strand, 3063648 - 3063864
Alignment:
| Q |
146 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatatat-tacacattatca--ggtttagatcacactatgatccaaccttcactctc |
242 |
Q |
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|||||||||| ||||||||| |||||||||||||| ||||||| |||| |||| || | | || ||||| || ||| || ||||||||||||||| |
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| T |
3063648 |
tgcagaagctattatatccacaaacaccactacctgcactaacagtataagtacatatattaaagggcttagaccatactgtggtccaaccttcactctt |
3063747 |
T |
|
| Q |
243 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
342 |
Q |
| |
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||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| |||||| | || || |||||||||| ||| |
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| T |
3063748 |
agttgaactcttaggatgcttgtaaagtgtgaacactccatcaaaattaagagttgctctaagataaaattgtgtggtcgagacgttactctcttcttcg |
3063847 |
T |
|
| Q |
343 |
tacacattgtatttctc |
359 |
Q |
| |
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|||||||||||||||| |
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| T |
3063848 |
aacacattgtatttctc |
3063864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 3055643 - 3055427
Alignment:
| Q |
146 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatata-ttacacat--tatcaggtttagatcacactatgatccaaccttcactctc |
242 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||| | || ||||||| ||||| || ||||||||||||| ||||||||| ||||| | |||||||| |
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| T |
3055643 |
tgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagaccacactatggtccaaacatcactctc |
3055544 |
T |
|
| Q |
243 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
342 |
Q |
| |
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||| ||| |||| |||| |||||||||||| ||||| || ||||||||||||||||| |||| ||||| | ||| | || ||||||||||||| ||| |
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| T |
3055543 |
agttgaattcttgggatacttgtaaagtgtgaacactccatcaaaattaagagttgccctaacataaaattcagtggtagagactttactctcttgctct |
3055444 |
T |
|
| Q |
343 |
tacacattgtatttctc |
359 |
Q |
| |
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|||||||||||||||| |
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| T |
3055443 |
gacacattgtatttctc |
3055427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 3034781 - 3034565
Alignment:
| Q |
146 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatatat-tacacat--tatcaggtttagatcacactatgatccaaccttcactctc |
242 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||||| |||||||||||| |||| || ||||||| ||||| |||||| || |||||||||||| || |
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| T |
3034781 |
tgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagaccacactgtggtccaaccttcaccatc |
3034682 |
T |
|
| Q |
243 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
342 |
Q |
| |
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| | ||| |||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||| || | ||| | || ||||||||||||| ||| |
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| T |
3034681 |
aattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaagagtggtagagactttactctcttgctct |
3034582 |
T |
|
| Q |
343 |
tacacattgtatttctc |
359 |
Q |
| |
|
|||||||||||||||| |
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| T |
3034581 |
gacacattgtatttctc |
3034565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 146 - 357
Target Start/End: Complemental strand, 3042823 - 3042609
Alignment:
| Q |
146 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatatat-tacacat--tatcaggtttagatcacactatgatccaaccttcactctc |
242 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||| ||| |||| |||| || ||||||| ||||| ||||| || |||||||||||| || |
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|
| T |
3042823 |
tgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatc |
3042724 |
T |
|
| Q |
243 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
342 |
Q |
| |
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| | ||| |||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||| || | ||| | || ||||||||||||| |||| |
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| T |
3042723 |
aattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttct |
3042624 |
T |
|
| Q |
343 |
tacacattgtatttc |
357 |
Q |
| |
|
|||||||||||||| |
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| T |
3042623 |
gacacattgtatttc |
3042609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 3067758 - 3067854
Alignment:
| Q |
217 |
cacactatgatccaaccttcactctcagtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaat |
313 |
Q |
| |
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|||||||| |||||||| |||| ||||| ||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||| ||||||| |
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| T |
3067758 |
cacactatagtccaacctccactatcagttgaactctttggatgcttaagaagtgtgaacactccatcaaaattaagagttgctctaagataaaaat |
3067854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 313
Target Start/End: Original strand, 3071334 - 3071493
Alignment:
| Q |
157 |
ttatatccataaacaccactacctaaactaacaatatatt---acacattatcaggtttagatcacactatgatccaaccttcactctcagtcgaactct |
253 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| | | ||| | ||| | ||| |||||| | ||||| | |||| ||||| || ||| |
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|
| T |
3071334 |
ttatatccacaaacaccactacctgaactaacaatatattgacatatatttttaggatgagaccacactgtagtccaatttccactatcagttgagttct |
3071433 |
T |
|
| Q |
254 |
ttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaat |
313 |
Q |
| |
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||||||||||| || ||| |||||| || ||||||||||||||||||||||| ||||||| |
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| T |
3071434 |
ttggatgcttgaaaggtgaaaacactccatcaaaattaagagttgctctaagataaaaat |
3071493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 3040536 - 3040464
Alignment:
| Q |
241 |
tcagtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaat |
313 |
Q |
| |
|
||||| ||| |||| ||||||||| |||||| |||||| || |||||||||| ||||||||||| ||||||| |
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|
| T |
3040536 |
tcagttgaattcttcggatgcttgaaaagtgaaaacactccatcaaaattaattgttgctctaagataaaaat |
3040464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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