View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11935_low_9 (Length: 296)
Name: NF11935_low_9
Description: NF11935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11935_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 38609455 - 38609718
Alignment:
| Q |
2 |
cattgttgtttagtttgtggctttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcacattgtcaagatacattgttatc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38609455 |
cattgttgtttagtttgtggctttgtgctgcgcttctttctccattgaagtgaaactttgaatttgtagttaattcacat-------------tgttatc |
38609541 |
T |
|
| Q |
102 |
aaaggctttgtggctttgttgttttattagttctttcataaaccgtttgttgatttagtctttacagttttcttgagattatcttggtgtttccatgcat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609542 |
aaaggctttgtggctttgttgttttattagttctttaataaaccgtttgttgatttagtctttacagttttcttgagattatcttggtgtttccatgcat |
38609641 |
T |
|
| Q |
202 |
ggtttctgctttggtgtcaactataatgagagcacattgtcattcttgttgggtttaattaaatgatttagtaactg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609642 |
ggtttctgctttggtgtcaactataatgagagcacattgtcattcttgttgggtttaattaaatgatttagtaactg |
38609718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 38794238 - 38794502
Alignment:
| Q |
2 |
cattgttgtttagtttgtggctttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcacattgtcaagatacattgttatc |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38794238 |
cattgttgtttagtttgtggctttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcacattgt-------------tatc |
38794324 |
T |
|
| Q |
102 |
aaaggctttgtggctttgttgttttatt-agttctttcataaaccgtttgttgatttagtctttacagttttcttgagattatcttggtgtttccatgca |
200 |
Q |
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| T |
38794325 |
aaaggctttgtggctttgttgttttatttagttctttaataaaccgtttgttgatttagtctttacagttttcttgagattatcttggtgtttccatgca |
38794424 |
T |
|
| Q |
201 |
tggtttctgctttggtgtcaactataatgagagcacattgtcattcttgttgggtttaattaaatgatttagtaactg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794425 |
tggtttctgctttggtgtcaactataatgagagcacattgtcattcttgttgggtttaattaaatgatttagtaactg |
38794502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 34593091 - 34593224
Alignment:
| Q |
118 |
tgttgttttattagttctttcataaaccgtttgttgatttagtctttacagttttcttgagattatcttggtgtttccatgcatggtttctgctttggtg |
217 |
Q |
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||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34593091 |
tgttgctttattagttctttaataagccgtttgttgatttagtctttacagttttcttgagattagcttggtgtttccatgcatggtttctgctttggta |
34593190 |
T |
|
| Q |
218 |
tcaactataatgagagcacattgtcattcttgttgg |
253 |
Q |
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| T |
34593191 |
tcaac--taatgagagcatattgtcattcttgttgg |
34593224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 34593001 - 34593083
Alignment:
| Q |
2 |
cattgttgtttagtttgtggctttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcacattgt |
84 |
Q |
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||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||| |
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| T |
34593001 |
cattgttgtttagtttgtggctttgtgctgcacttctttatctgttgaagtcaaactttgaatttgtagttaattcacgttgt |
34593083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 38120667 - 38120610
Alignment:
| Q |
23 |
tttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcaca |
80 |
Q |
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|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
38120667 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
38120610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 34593279 - 34593307
Alignment:
| Q |
250 |
ttgggtttaattaaatgatttagtaactg |
278 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
34593279 |
ttgggtttaattaaatgatttagtaactg |
34593307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 33078699 - 33078770
Alignment:
| Q |
118 |
tgttgttttattagttctttcataaaccgtttgttgatttagtctttacagttttcttgagattatcttggt |
189 |
Q |
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| T |
33078699 |
tgttgctttattagttctttaataaaccgtttgttgatttagtctttacagttttcttgagattatcttggt |
33078770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 28730244 - 28730187
Alignment:
| Q |
23 |
tttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcaca |
80 |
Q |
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|||||||||| ||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
28730244 |
tttgtgctgcacttctttgtctcatgaagtgaaactctgaatttgtagttaattcaca |
28730187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 33078629 - 33078678
Alignment:
| Q |
2 |
cattgttgtttagtttgtggctttgtgctgcgcttctttctccgttgaagt |
52 |
Q |
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||||||||||||||||||||||||||||| | ||||||| || |||||||| |
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| T |
33078629 |
cattgttgtttagtttgtggctttgtgct-cacttctttatctgttgaagt |
33078678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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