View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11936_high_11 (Length: 241)

Name: NF11936_high_11
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11936_high_11
NF11936_high_11
[»] chr8 (5 HSPs)
chr8 (86-220)||(23576345-23576479)
chr8 (1-88)||(23607657-23607744)
chr8 (134-225)||(23595910-23596001)
chr8 (134-225)||(23604832-23604923)
chr8 (144-224)||(23590648-23590728)
[»] chr2 (1 HSPs)
chr2 (154-225)||(34339694-34339765)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 23576479 - 23576345
Alignment:
Q  86 ttagccacgattctgtaattctcattaacatgccaaacaatgcactagaagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgcct 185  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23576479 ttagccgcgattctgtaattctcataaacattccaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgcct 23576380  T
Q  186 tgggaactggtgctgtagaagattccggcaggctt 220  Q
    |||||||||||||||||||||||||| ||||||||    
T  23576379 tgggaactggtgctgtagaagattccagcaggctt 23576345  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23607744 - 23607657
Alignment:
Q  1 aaacaaaaaacataaattgaaggaacactttcttaaaaacattacaggtgtgaggtacaagtacagctatagtaataaactatgttta 88  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23607744 aaacaaaacacataaattgaaggaacactttcttaaaaacattacaggtgtgaggtacaagtacaactatagtaataaactatgttta 23607657  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 23596001 - 23595910
Alignment:
Q  134 aagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctg 225  Q
    |||||||||||| | ||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  23596001 aagaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcaggcttccctg 23595910  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 23604923 - 23604832
Alignment:
Q  134 aagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctg 225  Q
    |||||||||||| | ||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  23604923 aagaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcaggcttccctg 23604832  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 23590728 - 23590648
Alignment:
Q  144 tcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccct 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  23590728 tcgagtaaaggctcttacgctgtagtctcttgtccaccgccttgggaactagtgttgtagaagattctggcaggcttccct 23590648  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 34339765 - 34339694
Alignment:
Q  154 gctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctg 225  Q
    |||||||||||||||||||||| || || ||||| ||||  |||||||||||||||||||||||||| ||||    
T  34339765 gctcttacgctgtagtctcttgtcctccaccttgagaaccagtgctgtagaagattccggcaggcttgcctg 34339694  T

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