View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11936_high_4 (Length: 397)

Name: NF11936_high_4
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11936_high_4
NF11936_high_4
[»] chr6 (20 HSPs)
chr6 (146-386)||(31290141-31290370)
chr6 (1-148)||(31290408-31290561)
chr6 (152-200)||(26952498-26952546)
chr6 (152-200)||(26961991-26962039)
chr6 (152-200)||(26980289-26980337)
chr6 (163-200)||(26649356-26649393)
chr6 (163-200)||(26755324-26755361)
chr6 (103-148)||(27608250-27608295)
chr6 (103-148)||(27715637-27715682)
chr6 (101-148)||(26058891-26058938)
chr6 (101-148)||(26078861-26078908)
chr6 (1-39)||(2820373-2820411)
chr6 (1-59)||(8931591-8931649)
chr6 (1-58)||(5970098-5970155)
chr6 (1-58)||(9195744-9195801)
chr6 (1-58)||(9617446-9617503)
chr6 (1-58)||(15443707-15443764)
chr6 (1-58)||(16766709-16766766)
chr6 (1-58)||(26562701-26562758)
chr6 (114-147)||(26876539-26876572)
[»] chr5 (7 HSPs)
chr5 (1-58)||(22423802-22423859)
chr5 (9-52)||(16374338-16374381)
chr5 (9-58)||(21522770-21522819)
chr5 (9-58)||(21533336-21533385)
chr5 (1-54)||(41558648-41558701)
chr5 (1-53)||(4991372-4991423)
chr5 (26-58)||(37328834-37328866)
[»] scaffold0349 (1 HSPs)
scaffold0349 (103-148)||(16263-16308)
[»] chr7 (5 HSPs)
chr7 (1-58)||(6028637-6028694)
chr7 (1-53)||(7328686-7328738)
chr7 (1-61)||(7438718-7438778)
chr7 (1-54)||(17307905-17307958)
chr7 (1-58)||(24339654-24339711)
[»] chr2 (1 HSPs)
chr2 (1-46)||(44605141-44605186)
[»] chr1 (8 HSPs)
chr1 (1-107)||(264616-264724)
chr1 (1-58)||(44482242-44482299)
chr1 (289-319)||(18008612-18008642)
chr1 (1-46)||(14332420-14332465)
chr1 (1-58)||(25361898-25361955)
chr1 (1-54)||(34712377-34712430)
chr1 (2-46)||(40158412-40158456)
chr1 (1-41)||(43609825-43609865)
[»] chr3 (3 HSPs)
chr3 (1-102)||(45382755-45382858)
chr3 (1-59)||(16192739-16192797)
chr3 (1-58)||(8039825-8039882)
[»] chr8 (4 HSPs)
chr8 (110-148)||(29270983-29271021)
chr8 (1-58)||(22651988-22652045)
chr8 (1-58)||(29447100-29447157)
chr8 (65-105)||(31105813-31105853)
[»] chr4 (2 HSPs)
chr4 (1-59)||(24613690-24613748)
chr4 (9-61)||(4383387-4383439)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-57)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 146 - 386
Target Start/End: Complemental strand, 31290370 - 31290141
Alignment:
Q  146 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290370 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 31290271  T
Q  246 actagtaaaatagaatgtactactctatagtactacactaagataacttgtactacaagttatctatctaagctatataatatcctcattttgttcacgg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||| ||| ||    
T  31290270 actagtaaaatagaatgtactactctatagtactacactaagataacttgta-----------ctatctaagctatataatatcctcattttgctcatgg 31290182  T
Q  346 tgtaatagtctccattgaagagaaagaatgctattgatgtc 386  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  31290181 tgtaatagtctccatagaagagaaagaatgctattaatgtc 31290141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 31290561 - 31290408
Alignment:
Q  1 aatttgagaaaataacataaatgaatgta------attacatatgtcggtgtcgtgtcggtgtcaaatacacacatgttggacaccagacacgccttcaa 94  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31290561 aatttgagaaaataacataaatgaatgtatacgtaattacatatgtcggtgtcatgtcggtgtcaaatacacacatgttggacaccagacacgccttcaa 31290462  T
Q  95 tgagaagtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  31290461 tgagaagtgtttgggaattgaatacaggtgcctcgagcctcatgtagtttctgt 31290408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26952546 - 26952498
Alignment:
Q  152 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 200  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26952546 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26962039 - 26961991
Alignment:
Q  152 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 200  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26962039 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26961991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26980337 - 26980289
Alignment:
Q  152 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 200  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  26980337 tatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaa 26980289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 26649393 - 26649356
Alignment:
Q  163 atatattgcaagataaaacaacaactaacctgactcaa 200  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26649393 atatattgcaagataaaacaacaacgaacctgactcaa 26649356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 26755361 - 26755324
Alignment:
Q  163 atatattgcaagataaaacaacaactaacctgactcaa 200  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26755361 atatattgcaagataaaacaacaacgaacctgactcaa 26755324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 27608250 - 27608295
Alignment:
Q  103 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  27608250 gtttgggaattcaaaataggtgcatccagcctcatgtagtttctgt 27608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 27715637 - 27715682
Alignment:
Q  103 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  27715637 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 27715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 26058938 - 26058891
Alignment:
Q  101 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26058938 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 26078908 - 26078861
Alignment:
Q  101 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26078908 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26078861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2820411 - 2820373
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatg 39  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  2820411 aatttgagaaaataaaataaatgaatgtaatcacatatg 2820373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8931649 - 8931591
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 59  Q
    |||||||||||||||||||| | | | |||||| || ||||| ||||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtca 8931591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5970155 - 5970098
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||| ||||| |||||| | | |||||||||| |||| |||||||||||||||||    
T  5970155 aatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtc 5970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9195801 - 9195744
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | | |||||||| || |||||||||||||| ||||||    
T  9195801 aatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtc 9195744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9617446 - 9617503
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | |||||||||| || ||||||||||||  |||||||    
T  9617446 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtc 9617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15443707 - 15443764
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    |||||||||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||    
T  15443707 aatttgagaaaataacataattcaatataattatatatgttggtgttgtgtcgatgtc 15443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16766709 - 16766766
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  16766709 aatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 16766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26562701 - 26562758
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | | |||||||| || ||||| |||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 26876572 - 26876539
Alignment:
Q  114 gaatataggtgcctccagcctcatgtagtttctg 147  Q
    |||||||||||| |||||||||||||||||||||    
T  26876572 gaatataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22423859 - 22423802
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | ||| |||||| ||||||||||||||||||||||||    
T  22423859 aatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 16374381 - 16374338
Alignment:
Q  9 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 52  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  16374381 aaaataacataaatcagtgtaattacatgtgtcggtgtcgtgtc 16374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 21522770 - 21522819
Alignment:
Q  9 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21522770 aaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 21533336 - 21533385
Alignment:
Q  9 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21533336 aaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41558701 - 41558648
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 54  Q
    ||||||||||||| |||||| | |||||||||| || |||| ||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcgg 41558648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4991423 - 4991372
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 53  Q
    ||||||||||||| |||||||| | |||||||| || ||||||||||||||||    
T  4991423 aatttgagaaaatgacataaatca-tgtaattagatgtgtcggtgtcgtgtcg 4991372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 37328866 - 37328834
Alignment:
Q  26 tgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||| |||||||||||||||||||||    
T  37328866 tgtaattacatgtgtcggtgtcgtgtcggtgtc 37328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 16308 - 16263
Alignment:
Q  103 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  16308 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6028637 - 6028694
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||| || ||||||||| | |||||||||||| |||||||||||||||| |||||    
T  6028637 aatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtc 6028694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7328738 - 7328686
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 53  Q
    |||||||||||||||||||| | | |||||||| || ||||||||||||||||    
T  7328738 aatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7438718 - 7438778
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 61  Q
    ||||||| ||||| |||||| | ||||||||||||  |||||||||| |||||||||||||    
T  7438718 aatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaa 7438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17307905 - 17307958
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 54  Q
    |||||||||||||||||||| | | |||||||| || ||| |||||||||||||    
T  17307905 aatttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24339654 - 24339711
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  24339654 aatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 24339711  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44605186 - 44605141
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 46  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||    
T  44605186 aatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 264616 - 264724
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatacacacat--gttggacaccagacacgccttcaatgag 98  Q
    ||||| ||||| |||||||  | |||||||| |||| ||| ||||||||||| ||||| || ||| ||||  ||||| |||| |||||||| || |||||    
T  264616 aatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgtcgaacacaaacatatgttgggcacctgacacgccatctatgag 264715  T
Q  99 aagtgtttg 107  Q
    |||||||||    
T  264716 aagtgtttg 264724  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44482242 - 44482299
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | | |||||||| || |||||||||||||||||||||    
T  44482242 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 44482299  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 18008642 - 18008612
Alignment:
Q  289 taacttgtactacaagttatctatctaagct 319  Q
    |||||||||||||||||||||||||||||||    
T  18008642 taacttgtactacaagttatctatctaagct 18008612  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14332420 - 14332465
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 46  Q
    ||||||||||||| |||||| | |||||||| ||||||||||||||    
T  14332420 aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25361898 - 25361955
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | | |||||||| || |||| ||||||||||||||||    
T  25361898 aatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34712430 - 34712377
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 54  Q
    |||||||||||||||||||| | | |||||||| || |||| ||||||||||||    
T  34712430 aatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcgg 34712377  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 40158456 - 40158412
Alignment:
Q  2 atttgagaaaataacataaatgaatgtaattacatatgtcggtgt 46  Q
    |||||||||||| ||||||||||||| ||| |||| |||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgt 40158412  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43609865 - 43609825
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtc 41  Q
    |||||||||||||||||||| |||||||||| |||| ||||    
T  43609865 aatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45382755 - 45382858
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgttggacaccagacacgccttcaatgag 98  Q
    ||||| |||||||||||||  |||||||||| ||||||||||||| | ||| ||||||| | ||  ||| |||| ||||||| |||| |||||| || ||    
T  45382755 aatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatcag 45382854  T
Q  99 aagt 102  Q
    ||||    
T  45382855 aagt 45382858  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16192797 - 16192739
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 59  Q
    |||||||||||||||||||| | | |||||||| || ||| | ||||||||||||||||    
T  16192797 aatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtca 16192739  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8039882 - 8039825
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| | |||| | | |||||||| || |||||||||||||||||||||    
T  8039882 aatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 8039825  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 29270983 - 29271021
Alignment:
Q  110 aattgaatataggtgcctccagcctcatgtagtttctgt 148  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29270983 aattgaatataggtgcatccagtctcatgtagtttctgt 29271021  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22651988 - 22652045
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||| ||||| |||||| | ||| ||||||||  |||||||||||||||||||||    
T  22651988 aatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29447157 - 29447100
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 58  Q
    ||||||||||||| |||||| | ||||||| ||||  |||||||||| ||||||||||    
T  29447157 aatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtc 29447100  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 31105853 - 31105813
Alignment:
Q  65 acacatgttggacaccagacacgccttcaatgagaagtgtt 105  Q
    ||||||||||||||||||||||  |||||||| ||||||||    
T  31105853 acacatgttggacaccagacacatcttcaatgtgaagtgtt 31105813  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24613748 - 24613690
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 59  Q
    ||||||||||||| |||||| | ||||||| ||||  |||||||||| |||||||||||    
T  24613748 aatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtca 24613690  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 4383387 - 4383439
Alignment:
Q  9 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 61  Q
    ||||| |||||| | | |||||||||| ||||| |||||||||||||||||||    
T  4383387 aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtcaaa 4383439  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44572 - 44516
Alignment:
Q  1 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 57  Q
    ||||||||||||| |||||| | | |||||||| || ||||||| ||||||||||||    
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgt 44516  T

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