View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11936_high_7 (Length: 332)

Name: NF11936_high_7
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11936_high_7
NF11936_high_7
[»] chr4 (13 HSPs)
chr4 (20-316)||(2375995-2376293)
chr4 (79-151)||(2360921-2360993)
chr4 (105-151)||(2380051-2380097)
chr4 (24-151)||(2460600-2460727)
chr4 (24-78)||(2367678-2367732)
chr4 (105-151)||(2390934-2390980)
chr4 (20-80)||(2486306-2486366)
chr4 (104-150)||(2525951-2525997)
chr4 (108-150)||(2536689-2536731)
chr4 (104-150)||(5101951-5101997)
chr4 (104-150)||(5106223-5106269)
chr4 (24-78)||(12126883-12126937)
chr4 (24-145)||(2547535-2547656)
[»] chr8 (1 HSPs)
chr8 (24-151)||(39516860-39516987)
[»] chr3 (1 HSPs)
chr3 (24-85)||(51763147-51763208)
[»] chr5 (2 HSPs)
chr5 (28-143)||(39252840-39252955)
chr5 (24-76)||(32268773-32268825)
[»] chr1 (2 HSPs)
chr1 (24-87)||(15837956-15838019)
chr1 (34-86)||(52085555-52085607)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 2376293 - 2375995
Alignment:
Q  20 gaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2376293 gaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgatg 2376194  T
Q  120 cattcccataactcatctggtaaatatgaacagactgctgcccttgctcgcttcataggg--nnnnnnnctgcgttggatttggatgatgatgatgctgc 217  Q
     ||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||         |||| ||||||||||||||||||||||||||    
T  2376193 tattcccataactcatatggtaaatatgaacacactgccgcccttgctcggttcatagggtttttttttctgccttggatttggatgatgatgatgctgc 2376094  T
Q  218 caccattgttacaaagtaaccagtttctctctatttttccctaatctttgtaactacctccctatttttctgacagtacctcccaatttttacgttatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||||||| |||||| ||||||||    
T  2376093 caccattgttacaaagtaaccagtttctctctatttttccctaatccttgtaactaccaccctctttttctgtaagtacctcctaattttgacgttatc 2375995  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 2360993 - 2360921
Alignment:
Q  79 acttcaaagaggggttgtcgccggagaggaatttgatgatgcattcccataactcatctggtaaatatgaaca 151  Q
    ||||||||| |||||| ||||||  ||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  2360993 acttcaaagtggggttatcgccgctgaggaatttgatgatgtgttcccatagctcatctggtaaatacgaaca 2360921  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 2380097 - 2380051
Alignment:
Q  105 aggaatttgatgatgcattcccataactcatctggtaaatatgaaca 151  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2380097 aggaatttgatgatgtattcccataactcatctggtaaatttgaaca 2380051  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 2460600 - 2460727
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatgcatt 123  Q
    |||||||||| ||| |||||||||||||| ||   ||||||||| ||||||||||| || |||| | ||| || | ||  ||||||||||| |||||  |    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagtgtggtggttgtcgtcgaggaatttgaagatgctct 2460699  T
Q  124 cccataactcatctggtaaatatgaaca 151  Q
    ||||||  || |||||||||| ||||||    
T  2460700 cccatatttcctctggtaaatgtgaaca 2460727  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 2367732 - 2367678
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 78  Q
    |||||||||| |||||||||||||||||||||   ||||||||||||||| ||||    
T  2367732 gagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 2390980 - 2390934
Alignment:
Q  105 aggaatttgatgatgcattcccataactcatctggtaaatatgaaca 151  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  2390980 aggaatttgatgatgtattcccacaactcatctggtaaatttgaaca 2390934  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 2486306 - 2486366
Alignment:
Q  20 gaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagac 80  Q
    |||||||||||||| ||||||||||||||| |||||   ||| ||||||| ||||||||||    
T  2486306 gaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagagac 2486366  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 2525951 - 2525997
Alignment:
Q  104 gaggaatttgatgatgcattcccataactcatctggtaaatatgaac 150  Q
    ||||||||||| ||||  |||||||||||| ||||||||||||||||    
T  2525951 gaggaatttgaagatgtgttcccataactcctctggtaaatatgaac 2525997  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 2536689 - 2536731
Alignment:
Q  108 aatttgatgatgcattcccataactcatctggtaaatatgaac 150  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||    
T  2536689 aatttgaagatgtattcccataactcctctggtaaatatgaac 2536731  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 5101997 - 5101951
Alignment:
Q  104 gaggaatttgatgatgcattcccataactcatctggtaaatatgaac 150  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||    
T  5101997 gaggaatttgaagatgcgctcccataactcatccggtaaatatgaac 5101951  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 5106269 - 5106223
Alignment:
Q  104 gaggaatttgatgatgcattcccataactcatctggtaaatatgaac 150  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||    
T  5106269 gaggaatttgaagatgccctcccataactcatccggtaaatatgaac 5106223  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 12126883 - 12126937
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 78  Q
    |||||| ||| |||||||||||||||||||||   ||||||||| ||||||||||    
T  12126883 gagaataggagacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 2547535 - 2547656
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatgcatt 123  Q
    ||||| |||| ||||||||||||||| |||||   |||||||||||||||||| || || |||| |   | || | |   ||||||||||| ||||   |    
T  2547535 gagaaccggagacggttggtgatggacagaaactgtttggagacgatggagagcgattttaaagcgtcctcgtagacattgaggaatttgaagatgtgct 2547634  T
Q  124 cccataactcatctggtaaata 145  Q
    ||||||||||||||||||||||    
T  2547635 cccataactcatctggtaaata 2547656  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 39516860 - 39516987
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatgcatt 123  Q
    ||||||| || |||||||||||||| ||||||   | |||||||||||||||||||||| |||| | ||||||| |||  ||||||||||| |||  | |    
T  39516860 gagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttgaagatagact 39516959  T
Q  124 cccataactcatctggtaaatatgaaca 151  Q
    ||||||  || || ||||||||||||||    
T  39516960 cccatatatcctccggtaaatatgaaca 39516987  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 51763208 - 51763147
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 85  Q
    |||||||||||||||| |||||||||||| ||   |||||| |||||||||||||| |||||    
T  51763208 gagaatcggaaacggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaa 51763147  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 39252955 - 39252840
Alignment:
Q  28 atcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatgcattccca 127  Q
    |||||| ||||||| |||||||||||||   | |||||||||  ||||  |||||||||| | | |||||  ||  | ||||||| | ||||||||||||    
T  39252955 atcggagacggttgctgatggagagaaactgtatggagacgaaagagacggacttcaaagtgtgattgtctgcgttgtggaatttcaagatgcattccca 39252856  T
Q  128 taactcatctggtaaa 143  Q
    |||||| |||||||||    
T  39252855 taactcctctggtaaa 39252840  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 32268773 - 32268825
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagag 76  Q
    |||||||| | |||||||||||||||||| ||   ||||||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 15838019 - 15837956
Alignment:
Q  24 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaag 87  Q
    |||||||||| |||||||||||||||||||||   ||||||||| || ||||| ||||| ||||    
T  15838019 gagaatcggagacggttggtgatggagagaaactgtttggagaccatcgagagggacttgaaag 15837956  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 52085555 - 52085607
Alignment:
Q  34 aacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaa 86  Q
    |||||||||||||||| || ||  |||||||||||||||| ||||||| ||||    
T  52085555 aacggttggtgatggaaaggaactttttggagacgatggaaagagactccaaa 52085607  T

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