View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11936_low_1 (Length: 447)
Name: NF11936_low_1
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11936_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 3426502 - 3426961
Alignment:
| Q |
1 |
acaaaagaaagacattgttgttgtaaatgaataatgagcaaaagaataagcataacatgagcaaattgtacaggttaaagattcaatacaattcaggtat |
100 |
Q |
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| T |
3426502 |
acaaaagaaagacattgttgttgtaaatgaataatgagcaaaagaataagcataacatgagcaaattgtacaggttaaagattcaatacaatttaggtat |
3426601 |
T |
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| Q |
101 |
caatttcgatttgacttagttgttaattcgaattttagtaaactcaaaagtgaaaccgactttacattgttggactca-----------gtaaactaaaa |
189 |
Q |
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| T |
3426602 |
cgctttcaatatgacttagttgttaattcgaattttagtaaactcaaaagtgaaaccgactttacattgttggactcacggtgaactcagtaaactaaaa |
3426701 |
T |
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| Q |
190 |
taaacttgtaggaaatttttaaaatannnnnnnnnnnnnnnnnnnncatctcggatttcacattctgtttatctacttctttattaacttgatattgttc |
289 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3426702 |
taaacttgtaggaaatttttaaaatatttttttactttttttttt-catcttggatttcacattctgtttatctactactttattaacttgatattgttc |
3426800 |
T |
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| Q |
290 |
atgttagttttgttgaaattttgagttattgtattatataagtatgtctcatatatattattttaatatgaaataaacttgtgagaatccataagtcgag |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426801 |
atgttagttttgttgaaattttgagttattgtattatataagtatgtctcatatatattattttaatatgaaataaacttgtgagaatccataagtcgag |
3426900 |
T |
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| Q |
390 |
tttacaagttga--tcacgtagac-aaatgagtttatttaaactctagaaattgacagcct |
447 |
Q |
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| T |
3426901 |
tttacaagttgatttcacgtagacaaaatgagtttatttaaactctagaaattgacagcct |
3426961 |
T |
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