View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11936_low_10 (Length: 242)
Name: NF11936_low_10
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11936_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3426510 - 3426287
Alignment:
| Q |
1 |
ttcttttgttctatgaagatgatcttcttttgacatgtattcaaagtgaattcttaaagcagtaaatggaacaactctcaaataggttctcacttaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3426510 |
ttcttttgttctatgaagatgatcttcttttgacatgtattcaaagtgaattcttaaagcagtaaatggaacaactgtcaaataggttctcacttaaata |
3426411 |
T |
|
| Q |
101 |
tcttggctatcctcattaattcctgagaattgaactcattcccacaaaggagggtatccttttatctcaacatgattatattcaagaattgttggataaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3426410 |
tcttggccatcctcattaattcctgagaattgaactcattcccacaaaggagggtatccttttatctcaacatgattatattcaagaattgttggataaa |
3426311 |
T |
|
| Q |
201 |
tttaatatgactaatgcaaagcct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3426310 |
tttaatatgactaatgcaaagcct |
3426287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University