View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11936_low_2 (Length: 439)
Name: NF11936_low_2
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11936_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 2 - 346
Target Start/End: Original strand, 35483296 - 35483641
Alignment:
| Q |
2 |
gtggaaaggaagaggacatggttattggttctagattctaaactctcctatatctttgtgttcaaagaaacaaaacatagtgacattatcatctcttgag |
101 |
Q |
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| T |
35483296 |
gtggaaaggaagaggacatggttattggttctagattctaaactctcctatatctttgtgttcaaagaaacaagacatagtgacattatcatctcttgag |
35483395 |
T |
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| Q |
102 |
gttaaatatgttgcatgttaagttctttggttaggctcgttgctt-ctgagttgaagaatgaggagccctttgcaccttaaggtagataataaatcagca |
200 |
Q |
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| T |
35483396 |
gttaaatatgttgcatgttaagttctttggttaggctcattgcttactgagttgaagaatgaggagccctttgcaccttaaggtagataataaatcagca |
35483495 |
T |
|
| Q |
201 |
atcaattttatatgttagaagtagcacattgaaacaagatgtcattttttataagatcaagcaggaaaattaatgtttgaagtgatctattgcaacacaa |
300 |
Q |
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| T |
35483496 |
atcaattttatatgttagaagtagcacattggaataagatatcattttttataagatcaagcaggaaaataaatgtttgaagtgatctattgcaacacaa |
35483595 |
T |
|
| Q |
301 |
aatttcatgtttcaaggtgaaaggtttagagaattaagaactttac |
346 |
Q |
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| T |
35483596 |
aatttcatgtttcaaggtgaaaggtttagagaactaagaaccttac |
35483641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 35483717 - 35483762
Alignment:
| Q |
346 |
cggtgtaatattttgtgttgggtgtattaaaaattgtagcgggtta |
391 |
Q |
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| T |
35483717 |
cggtgtaatattttgtgttgggtgtattaaaaattgtagcgagtta |
35483762 |
T |
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