View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11936_low_3 (Length: 411)
Name: NF11936_low_3
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11936_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 273 - 403
Target Start/End: Original strand, 32343603 - 32343733
Alignment:
| Q |
273 |
tcagaaggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagc |
372 |
Q |
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| T |
32343603 |
tcagatggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagc |
32343702 |
T |
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| Q |
373 |
atattcctacaaccaaaatgaacttcatctc |
403 |
Q |
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| T |
32343703 |
atatccccacaaccaaaatgaacttcatctc |
32343733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 32343340 - 32343412
Alignment:
| Q |
16 |
caattccacctccaattcccttagatgttccacctccataacctccaattccacctacaattcccttagatat |
88 |
Q |
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| T |
32343340 |
caattccacctccaattcccttagatattccacctccataacctccaattccaccaacaattcccttagatat |
32343412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 32343334 - 32343367
Alignment:
| Q |
55 |
aacctccaattccacctacaattcccttagatat |
88 |
Q |
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| T |
32343334 |
aacctccaattccacctccaattcccttagatat |
32343367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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