View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11936_low_5 (Length: 356)
Name: NF11936_low_5
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11936_low_5 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 2491057 - 2490936
Alignment:
| Q |
171 |
ataaaagaccaaattattacctgaaactaatataagagacaaattttgtaacttgattttgcttaaattcaa-ttttcacgtgatattaagtagctttaa |
269 |
Q |
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| T |
2491057 |
ataaaagatcaaattattacctgaaattaatagaagagacaaattttgtaactttattttgcttaaattcaatttttcacgtgatattaagtagctttaa |
2490958 |
T |
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| Q |
270 |
accaac-aaaagtcgagtcaaa |
290 |
Q |
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| T |
2490957 |
accaacaaaaagtcgagtcaaa |
2490936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 2491210 - 2491128
Alignment:
| Q |
17 |
gaacatataaaaagcttattaaactcctaattcataaacaaacctaaatttttatcatacaaacataaaaactcatttcattg |
99 |
Q |
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| T |
2491210 |
gaacatataaaaagcttatcaaactcctaattcataaagaaacctaaatttttatcatacaaacataaaaactcatttcattg |
2491128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 2490905 - 2490853
Alignment:
| Q |
286 |
tcaaaatcaaagatgttacacgatagtttgatagattacatccaatcccaaca |
338 |
Q |
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| T |
2490905 |
tcaaaatcaaagatgttacacgaaagtttgatagattacatccaatcccaaca |
2490853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 10360588 - 10360545
Alignment:
| Q |
48 |
tcataaacaaacctaaatttttatcatacaaacataaaaactcat |
92 |
Q |
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| T |
10360588 |
tcataaacaaacc-aaatcttcatcatacaaacataaaaactcat |
10360545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 34873528 - 34873570
Alignment:
| Q |
48 |
tcataaacaaacctaaatttttatcatacaaacataaaaactc |
90 |
Q |
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| T |
34873528 |
tcataaacaaacctaaatcttcatcatacaaacatagaaactc |
34873570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 41850681 - 41850713
Alignment:
| Q |
48 |
tcataaacaaacctaaatttttatcatacaaac |
80 |
Q |
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| T |
41850681 |
tcataaacaaacccaaatttttatcatacaaac |
41850713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 28943 - 28903
Alignment:
| Q |
48 |
tcataaacaaacctaaatttttatcatacaaacataaaaac |
88 |
Q |
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| T |
28943 |
tcataaacaaacctaaatatttatcatacaaagatagaaac |
28903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 12254701 - 12254657
Alignment:
| Q |
48 |
tcataaacaaacctaaatttttatcatacaaacataaaaactcat |
92 |
Q |
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| T |
12254701 |
tcatgaacaaacccaattttttatcatacaaacatagaaactcat |
12254657 |
T |
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