View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11936_low_6 (Length: 334)
Name: NF11936_low_6
Description: NF11936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11936_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 52393099 - 52393037
Alignment:
| Q |
183 |
ctgctaaacaactagtcttatcttttagtaaaagtacttctatgcttcgtcatttaatcttgt |
245 |
Q |
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| T |
52393099 |
ctgctaaacaactagtcttatcttttagtaaaagtacttctatgcttcgtcatttaatcttgt |
52393037 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 52393166 - 52393122
Alignment:
| Q |
97 |
ttgtcttgccctagttctattggcaaattgcatcctctagtgtct |
141 |
Q |
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| T |
52393166 |
ttgtcttgccctagttctattggcaaattgcatcctctagtgtct |
52393122 |
T |
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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 52391653 - 52391620
Alignment:
| Q |
284 |
tgtacaagatttccacattccctcctatattttc |
317 |
Q |
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| T |
52391653 |
tgtacaagatttccacattccctcctatattttc |
52391620 |
T |
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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 8504639 - 8504716
Alignment:
| Q |
13 |
agatgaagcgtcgattcctccttcgcattgcacatcacacataacgtagacacctccggaggtagcacatttctcaac |
90 |
Q |
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| T |
8504639 |
agatgtagcgccgattcctcctttagattacacatgacacacaacggagaaacctccggcggtagcacattcctcaac |
8504716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 47476306 - 47476232
Alignment:
| Q |
24 |
cgattcctccttcgcattgcacatcacacataacgtagacacctccggaggtagcacatttctcaacccaagatt |
98 |
Q |
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| T |
47476306 |
cgattcttccttcacattgcacatcacacataacgtagacgcttccggtggtaacacattcctcaacgcaagatt |
47476232 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 40931796 - 40931846
Alignment:
| Q |
38 |
cattgcacatcacacataacgtagacacctccggaggtagcacatttctca |
88 |
Q |
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| T |
40931796 |
cattacacattacacataacgtagacacctccagaggtaggacattcctca |
40931846 |
T |
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