View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11937_low_1 (Length: 431)
Name: NF11937_low_1
Description: NF11937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11937_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 45547602 - 45547196
Alignment:
| Q |
10 |
caaaggcaagaaatttccgttgatgtttcttgagtcagacaaaatatataataaaccatccgaggattaataattacaagcagcaacatctacttgaaga |
109 |
Q |
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| T |
45547602 |
caaaggcaagaaatttccgttgatgtttcttgagtcagacaaaatatgtaataaaccacccgaggattaataattacaagcagcaacatctacttgaaga |
45547503 |
T |
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| Q |
110 |
gcagtgaaccaaaagatctagaaa-cattaaaccagcatttccatcttaatgagaggctaccatctttgatatgtcttcaaggaggaatttagactcagc |
208 |
Q |
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| T |
45547502 |
gcagtgaactaaaagatctagaaaacatcaaaccagcatttccatcttaatgagaggctaccatctttgatatgtcttcaaggaggaatttagactcagc |
45547403 |
T |
|
| Q |
209 |
agcaaagtcaataggaacaacggcccgtgctgttatcctttgcctcttctcaccattatactcattctgagaaacactgacccgcaagaggtgtggaatc |
308 |
Q |
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| T |
45547402 |
agcaaagtcaataggaacaacggcccgtgctgttatcctttgcctcttctcaccattatactcattctgagaaacactgacccgcaagaggtgtggaatc |
45547303 |
T |
|
| Q |
309 |
catgtagctttcttcaatttcatgtcataaggattctcttctccatcctgnnnnnnnnnncataaatgacaattggcatgcatgattcattctcgaacat |
408 |
Q |
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| T |
45547302 |
catgtagctttcttcaatttcatgtcataaggattctcttctccatcctgaaaaaaaaaacataaatgacaattggcatgcatgattcgttctcgaacat |
45547203 |
T |
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| Q |
409 |
taaaata |
415 |
Q |
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| T |
45547202 |
taaaata |
45547196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 45552161 - 45551819
Alignment:
| Q |
16 |
caagaaatttccgttgatgtttcttgagtcagacaaaatatataataaaccatccgaggattaataattacaagcagcaacatctacttgaaga-gcagt |
114 |
Q |
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|||||||||||| ||||| ||||| || |||| ||||||||||| |||| | || |||||||||| ||||||||||||||||||||||||| | ||||| |
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| T |
45552161 |
caagaaatttccattgatatttctggaatcagccaaaatatatactaaatcgtctaaggattaatatttacaagcagcaacatctacttgaaaaagcagt |
45552062 |
T |
|
| Q |
115 |
gaaccaaaagatctagaaacattaaaccagcatttccatcttaatgagaggctaccatctttgatatgtcttcaaggaggaatttagactcagcagcaaa |
214 |
Q |
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| T |
45552061 |
gaaccaaaagatctagaaagattgaatcagcatttccatcttattgagaggctgtcatcttcgatatatcttcaaggagaaatttagattc-gcagccaa |
45551963 |
T |
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| Q |
215 |
gtcaataggaacaacggcccgtgctgttatcctttgcctcttctcaccattatactcattctgagaaacactgacccgcaagaggtgtggaatccatgta |
314 |
Q |
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| T |
45551962 |
gtcaacaggaacaactgccacggctgtaatcttttgcctcttctcgttgttgttctcattctgagaaacactgacccgcaagaggtgtggaatccatgta |
45551863 |
T |
|
| Q |
315 |
gctttcttcaatttcatgtcataaggattctcttctccatcctg |
358 |
Q |
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||||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
45551862 |
gctttcttcaatttcattagatatggattctcttctccctcctg |
45551819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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