View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11937_low_4 (Length: 234)
Name: NF11937_low_4
Description: NF11937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11937_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 51399 - 51565
Alignment:
| Q |
44 |
ccggattcatcttaaaccgaccgatatgccgagatgacatccagcacgagagcaagaaaaggaaatggtctccgtgcagcttcaagtcacgccactctca |
143 |
Q |
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| T |
51399 |
ccggattcatcttaaaccgaccgatatgccgagatgacatccagcacgagagcaagaaaaggaaatggtctccgtgcagcttcaagtcacgccactctca |
51498 |
T |
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| Q |
144 |
ccaagatagaatcatggtcacatctgtagtatatatctagtttatagaagcggaatgccaatcgaca |
210 |
Q |
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| T |
51499 |
ccaagatagaatcatggtcacatctgtagtatatatctagttaatagaagcggaatgccaatcgaca |
51565 |
T |
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Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 24994679 - 24994834
Alignment:
| Q |
8 |
gagaagcaaaggtcaacggccaatggaggccctcccccggattcatcttaaaccgaccgatatgccgagatgacatccagcacgagagcaagaaaaggaa |
107 |
Q |
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| T |
24994679 |
gagaatcaaaggtcaacggccaatggaggccctcccccggattcatcttaaaccgaccgatatgccgagatgacatccagcacgagagcaagaaaaggaa |
24994778 |
T |
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| Q |
108 |
atggtctccgtgcagcttcaagtcacgccactctcaccaagatagaatcatggtca |
163 |
Q |
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| T |
24994779 |
atggtctccgtgcagcttcaagtcacgccactctcaccaagatagaatcatggtca |
24994834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 39928809 - 39928753
Alignment:
| Q |
61 |
cgaccgatatgccgagatgacatccagcacgagagcaagaaaaggaaatggtctccg |
117 |
Q |
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| T |
39928809 |
cgactgatatgtcgagatgacatccggcacgagagcaagaaaaggaaatggtctccg |
39928753 |
T |
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