View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_high_1 (Length: 729)
Name: NF11938_high_1
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_high_1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 373 - 729
Target Start/End: Original strand, 48570471 - 48570837
Alignment:
| Q |
373 |
ggtgaagtactcggaaggaaatggtagaaatggccataatccataacggaatgataagatcaaggtagaatcaccacaagtaagaggctctgataaaaat |
472 |
Q |
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| T |
48570471 |
ggtgaagtactcggaaggaaatggtagaaatggccataatccataacggaatgataagatcaaggtagaatcaccacaagtaagaggctctgataaaaat |
48570570 |
T |
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| Q |
473 |
caagttttggttcaaagaaaagccctagagagcaaatgtcatacaaacgaaagacataaatagtctaagacaaaaagacacgaggcctaagttaccaaat |
572 |
Q |
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| T |
48570571 |
caagttttggttcaaagaaaagccctagagagcaaatgtcatacaaacgaaagacataaatagtctaagacaaaaagacacgaggcctaagttaccaaat |
48570670 |
T |
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| Q |
573 |
atatatat----------gcacaaacacaaaccaagttaatatctttctgatttttagagaactctggagctgcaaactgtcaaaattaaaatcacaaca |
662 |
Q |
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| T |
48570671 |
atatatatatatatatacgcacaaacacaaaccaagttaatatttttctgatttttagagaactctggagctgcaaactgtcaaaattaaaatcacaaca |
48570770 |
T |
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| Q |
663 |
ggaatgctattaaaagctggcaaacacgtaccaatggatgaaaatcaaaacatcttaaaaagtagtc |
729 |
Q |
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| T |
48570771 |
ggaatgctattaaaagctggcaaacacgtaccaatggatgaaaatcaaaacatcttaaaaagtagtc |
48570837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 48570122 - 48570436
Alignment:
| Q |
20 |
aatgtcggagaaattgaactcgtggtcatggggaaaaataagcatattagcctcgaagggacaattgtacttcttaattcggtgctaaattcaattccaa |
119 |
Q |
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| T |
48570122 |
aatgtcggagaaattgaactcgtggtcatggggaaa--taagcatattagcctcgaagggacaactgtacttcttaattcggtgctaaattcaattccaa |
48570219 |
T |
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| Q |
120 |
tttttcatctttccgttttcaagatgccggtgacggttttgaagattaaagaagctaaaatttcagatttatcaagaacacagatataaaaacaaaatta |
219 |
Q |
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| T |
48570220 |
tttttcatctttcagttttcaagatgccggtgacggttttgaagattaaagaagctaaaatttcagatttatcaagaacac--atataaaaacaaaatta |
48570317 |
T |
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| Q |
220 |
atagcaaacattatcacttgtggtgataggctgtgaatatcacatgatatcgatttaagtgcttccatatgagtcgaagaatctaacttaatgatatcga |
319 |
Q |
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| T |
48570318 |
atagcaaacattatcacttgtggtgagaggctgtgaatatcacatgatatcgatttaagtgcttccatatgagtcgaagaatctaacttaatgatatcga |
48570417 |
T |
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| Q |
320 |
tttattccaacaaagtagc |
338 |
Q |
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| T |
48570418 |
tttattccaacaaagtagc |
48570436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 675
Target Start/End: Original strand, 47051043 - 47051117
Alignment:
| Q |
600 |
taatatctttctgatttttagagaactctggagctgcaaactgtcaaaattaaaatcacaacaggaatgctattaa |
675 |
Q |
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| T |
47051043 |
taatatctttttgattttcaaagaactctggagctaaaaactgtcaacattaaaa-cagaacatgaatgatattaa |
47051117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 719
Target Start/End: Original strand, 48107140 - 48107209
Alignment:
| Q |
650 |
taaaatcacaacaggaatgctattaaaagctggcaaacacgtaccaatggatgaaaatcaaaacatctta |
719 |
Q |
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| T |
48107140 |
taaaaacacaagaagaatgatattaaaagttggcaaacatgtaacaaagaatgtaaatcaaaacatctta |
48107209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 4864593 - 4864511
Alignment:
| Q |
82 |
aattgtacttcttaattcggtgctaaattcaattccaatttttcatctttccgttttcaagatgccggtgacggttttgaaga |
164 |
Q |
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| T |
4864593 |
aattgtccttcttaattctattttgaattctattcctatctttcatctttcctttttcaaaatgccggtgaaagttttgaaga |
4864511 |
T |
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