View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_high_11 (Length: 445)

Name: NF11938_high_11
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_high_11
NF11938_high_11
[»] chr5 (13 HSPs)
chr5 (23-294)||(27081128-27081387)
chr5 (264-445)||(27080923-27081104)
chr5 (305-369)||(11795175-11795239)
chr5 (305-369)||(20848081-20848145)
chr5 (305-369)||(26350409-26350473)
chr5 (305-369)||(36563597-36563661)
chr5 (305-369)||(38361750-38361814)
chr5 (310-388)||(13284676-13284754)
chr5 (304-345)||(11574045-11574086)
chr5 (305-369)||(9395357-9395421)
chr5 (305-369)||(13033058-13033122)
chr5 (305-369)||(13103031-13103095)
chr5 (305-369)||(37149014-37149078)
[»] chr6 (9 HSPs)
chr6 (305-357)||(8186376-8186428)
chr6 (310-369)||(6068999-6069058)
chr6 (305-355)||(6143561-6143611)
chr6 (305-369)||(2830342-2830406)
chr6 (305-369)||(6330122-6330186)
chr6 (305-369)||(8383028-8383092)
chr6 (305-369)||(11572204-11572268)
chr6 (305-369)||(26602330-26602394)
chr6 (305-369)||(33052853-33052917)
[»] chr2 (18 HSPs)
chr2 (305-369)||(12170458-12170522)
chr2 (305-355)||(13724109-13724159)
chr2 (310-428)||(23227272-23227390)
chr2 (305-369)||(16044376-16044440)
chr2 (305-369)||(37666669-37666733)
chr2 (308-362)||(12320183-12320236)
chr2 (305-369)||(3055565-3055629)
chr2 (305-369)||(4683991-4684055)
chr2 (330-366)||(6011775-6011811)
chr2 (305-369)||(13197769-13197833)
chr2 (305-369)||(15896849-15896913)
chr2 (305-369)||(31150660-31150724)
chr2 (305-369)||(37990072-37990136)
chr2 (305-369)||(38917581-38917645)
chr2 (329-397)||(41453090-41453158)
chr2 (305-369)||(41478698-41478762)
chr2 (305-369)||(44397554-44397618)
chr2 (305-369)||(44398693-44398757)
[»] chr8 (15 HSPs)
chr8 (312-369)||(13578871-13578928)
chr8 (309-366)||(24203035-24203092)
chr8 (305-369)||(25601059-25601123)
chr8 (305-369)||(54671-54735)
chr8 (305-369)||(2890221-2890285)
chr8 (305-369)||(3304337-3304401)
chr8 (305-369)||(6552662-6552726)
chr8 (305-369)||(7785837-7785901)
chr8 (305-369)||(7805758-7805822)
chr8 (305-369)||(8587177-8587241)
chr8 (305-369)||(12343199-12343263)
chr8 (305-369)||(31654620-31654684)
chr8 (305-369)||(32114534-32114598)
chr8 (305-369)||(43199413-43199477)
chr8 (305-369)||(44498246-44498310)
[»] chr3 (19 HSPs)
chr3 (309-366)||(1262265-1262322)
chr3 (305-369)||(8437432-8437496)
chr3 (305-369)||(48340404-48340468)
chr3 (310-369)||(9111553-9111612)
chr3 (305-428)||(21295326-21295449)
chr3 (299-369)||(2787891-2787961)
chr3 (321-366)||(2131734-2131779)
chr3 (303-352)||(31757428-31757477)
chr3 (304-369)||(33942991-33943056)
chr3 (305-369)||(4238601-4238665)
chr3 (305-369)||(10297986-10298050)
chr3 (305-369)||(17653719-17653783)
chr3 (305-369)||(19557111-19557175)
chr3 (305-369)||(22721938-22722002)
chr3 (305-369)||(34080089-34080153)
chr3 (305-369)||(37508928-37508992)
chr3 (305-369)||(44785455-44785519)
chr3 (305-369)||(46208037-46208101)
chr3 (305-369)||(49823440-49823504)
[»] chr1 (13 HSPs)
chr1 (337-418)||(46968446-46968527)
chr1 (313-373)||(3564225-3564285)
chr1 (305-369)||(11897061-11897125)
chr1 (320-355)||(5392219-5392254)
chr1 (307-357)||(12043613-12043663)
chr1 (299-369)||(14984838-14984908)
chr1 (305-369)||(9981654-9981718)
chr1 (305-369)||(26471124-26471188)
chr1 (305-369)||(27159417-27159481)
chr1 (305-369)||(31842854-31842918)
chr1 (305-369)||(39402025-39402089)
chr1 (305-369)||(44668152-44668216)
chr1 (305-369)||(47216758-47216822)
[»] chr7 (14 HSPs)
chr7 (305-369)||(7482232-7482296)
chr7 (307-351)||(7661085-7661129)
chr7 (307-434)||(28469490-28469617)
chr7 (299-355)||(94391-94447)
chr7 (305-369)||(1565788-1565852)
chr7 (305-369)||(1738506-1738570)
chr7 (305-369)||(7240756-7240820)
chr7 (305-369)||(22285706-22285770)
chr7 (305-369)||(23314198-23314262)
chr7 (305-369)||(31319458-31319522)
chr7 (305-369)||(36016255-36016319)
chr7 (305-369)||(36583402-36583466)
chr7 (305-369)||(38063972-38064036)
chr7 (305-369)||(46840867-46840931)
[»] chr4 (10 HSPs)
chr4 (305-352)||(45478168-45478215)
chr4 (308-369)||(41615735-41615796)
chr4 (305-369)||(3372128-3372192)
chr4 (305-369)||(20538745-20538809)
chr4 (305-369)||(24704377-24704441)
chr4 (305-369)||(43900556-43900620)
chr4 (305-369)||(47833618-47833682)
chr4 (305-369)||(47838676-47838740)
chr4 (305-369)||(48336270-48336334)
chr4 (305-369)||(53337377-53337441)
[»] scaffold1707 (1 HSPs)
scaffold1707 (305-369)||(1342-1406)
[»] scaffold0482 (1 HSPs)
scaffold0482 (305-369)||(12867-12931)
[»] scaffold0204 (1 HSPs)
scaffold0204 (305-369)||(23792-23856)
[»] scaffold0009 (1 HSPs)
scaffold0009 (305-369)||(49512-49576)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 27081387 - 27081128
Alignment:
Q  23 aatataaattttttacagtacatgataaatggaccctccctatgatataataaatttaaataccatatcaaatataaaaataggccctacaatattaatc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  27081387 aatataaattttttacagtacatgataaatggaccctccctatgatataataaatttaaatacaatatcaaatataaaaataggccctacaatattcatc 27081288  T
Q  123 caccaacaaaacattagaattaattaatcaattgtgtagtgagaatgaccgctgacagaatcatagtagaaaaatgaaatgttactacaagatagaacca 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||| ||    
T  27081287 caccaacaaaacattagacttaattaatcaattgtgtagtgagaatg------------atcatagtagaaaaatgaaatgttactacaagatagaatca 27081200  T
Q  223 tccattcctgttgattttattagcataaactacttagtagagatttataaagcaaagaaaatcttataaaat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  27081199 tccattcctgttgattttattagcataaactacttagtagagatttgtaaagcaaagaaaatcttacaaaat 27081128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 264 - 445
Target Start/End: Complemental strand, 27081104 - 27080923
Alignment:
Q  264 gatttataaagcaaagaaaatcttataaaataaccactatttccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaat 363  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  27081104 gatttataaagcaaagaaaatcttacaaaataactactctttccgatcctatttacaagagacatttaggtcaacaaaagttgatgtatttaatctaaat 27081005  T
Q  364 ttttaatcaagtaaatcatcttttactaacctaaatacttcttttaaatagaaccggagggagtaatttataagtttggact 445  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  27081004 ttttaatcaaataaatcatcttttactaacctaaatacttcttttaaatagaaccggatggagtagtttataagtttggact 27080923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 11795175 - 11795239
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  11795175 tccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 11795239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 20848081 - 20848145
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||||||||||  |||||||||  || |||||||||    
T  20848081 tccggtcctatttataagagaaatttaggtcaataaaagtgaatgtatttggactgaatttttaa 20848145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 26350473 - 26350409
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  26350473 tccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 26350409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 36563661 - 36563597
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  36563661 tccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 36563597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 38361814 - 38361750
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||| | ||||||||||||||||||  |||||||||  || |||||||||    
T  38361814 tccgatcctatttataagataaatttaggtcaataaaagtgaatgtatttggactgaatttttaa 38361750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 13284754 - 13284676
Alignment:
Q  310 tcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaatcaagtaaatcatctttta 388  Q
    ||||||||| || ||| |||||||  |  ||||||| ||||||||| ||||||||||||||||| || ||||| |||||    
T  13284754 tcctatttataatagatatttaggctatcaaaagtttatgtatttggtctaaatttttaatcaaatatatcatatttta 13284676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 11574045 - 11574086
Alignment:
Q  304 ttccgatcctatttacaagagacatttaggtcaataaaagtt 345  Q
    ||||| |||||||||||||| | |||||||||||||||||||    
T  11574045 ttccggtcctatttacaagaaaaatttaggtcaataaaagtt 11574086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 9395357 - 9395421
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  9395357 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 9395421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 13033058 - 13033122
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  13033058 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 13033122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 13103031 - 13103095
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  13103031 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 13103095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 37149078 - 37149014
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  37149078 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 37149014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 8186376 - 8186428
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgat 357  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  8186376 tccgctcctatatacaagagacatttgggtcaataaaagttgatgtatttgat 8186428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 6069058 - 6068999
Alignment:
Q  310 tcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||||||| || ||| ||||||||||| ||||||| ||||||||| |||||||||||||    
T  6069058 tcctatttataaaagatatttaggtcaacaaaagttaatgtatttggtctaaatttttaa 6068999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 6143561 - 6143611
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttg 355  Q
    |||||||||||||| |||||| ||||||||||| ||||||  |||||||||    
T  6143561 tccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttg 6143611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 2830342 - 2830406
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  2830342 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 2830406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 6330122 - 6330186
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  6330122 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 6330186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 8383092 - 8383028
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  8383092 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 8383028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 11572268 - 11572204
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  11572268 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 11572204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 26602330 - 26602394
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  26602330 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 26602394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 33052917 - 33052853
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  33052917 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 33052853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 12170522 - 12170458
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||||  || |||||||||    
T  12170522 tccgatcctatttacaagagaaaattaggtcaataaaagttaatgtatttggactgaatttttaa 12170458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 13724109 - 13724159
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttg 355  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  13724109 tccggtcctatttacaagagacatctaggtcaacaaaagttgatgtatttg 13724159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 23227390 - 23227272
Alignment:
Q  310 tcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaatcaagtaaatcatcttttactaacctaaatacttctttta 409  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||| || ||||| ||| |||  || ||||  ||||  | ||||||||| ||||| ||    
T  23227390 tcctatttataagagacattttggtcaacaaaagttgatgtatttggtccaaattcttagtcagatacatcacattttgttgacctaaatatttcttata 23227291  T
Q  410 aatagaaccggagggagta 428  Q
    ||||  ||| |||||||||    
T  23227290 aatatgaccagagggagta 23227272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 16044440 - 16044376
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||| || |||||||||    
T  16044440 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaa 16044376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 37666733 - 37666669
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||| || |||||||||    
T  37666733 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaa 37666669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 12320183 - 12320236
Alignment:
Q  308 gatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaa 362  Q
    ||||||||||| ||||| ||||||| ||||| |||||||||||||||| ||||||    
T  12320183 gatcctatttataagagtcatttagatcaat-aaagttgatgtatttggtctaaa 12320236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 3055565 - 3055629
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  3055565 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 3055629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 4684055 - 4683991
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  4684055 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 4683991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 6011811 - 6011775
Alignment:
Q  330 taggtcaataaaagttgatgtatttgatctaaatttt 366  Q
    ||||| || ||||||||||||||||||||||||||||    
T  6011811 taggttaaaaaaagttgatgtatttgatctaaatttt 6011775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 13197833 - 13197769
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  13197833 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 13197769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 15896849 - 15896913
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  15896849 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 15896913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 31150660 - 31150724
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||||| | ||  ||||| ||||||| |||||||||  ||||||||||||    
T  31150660 tccgatcctatttataagagaaagttgcgtcaacaaaagtttatgtatttggactaaatttttaa 31150724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 37990136 - 37990072
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  37990136 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 37990072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 38917645 - 38917581
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||| | ||||||||||||||||||  |||||||||  || |||||||||    
T  38917645 tccggtcctatttataagataaatttaggtcaataaaagtgaatgtatttggactgaatttttaa 38917581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 41453090 - 41453158
Alignment:
Q  329 ttaggtcaataaaagttgatgtatttgatctaaatttttaatcaagtaaatcatcttttactaacctaa 397  Q
    ||||||||||||||||| |||||||||  || |||||||||  || || |||| ||||| |||||||||    
T  41453090 ttaggtcaataaaagttaatgtatttggactgaatttttaacaaaatacatcaacttttgctaacctaa 41453158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 41478762 - 41478698
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  41478762 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 41478698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 44397554 - 44397618
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  44397554 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 44397618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 44398693 - 44398757
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  44398693 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 44398757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 13578871 - 13578928
Alignment:
Q  312 ctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||||| |||||| ||||||||||||||||||  |||||||||| || |||||||||    
T  13578871 ctatttataagagaaatttaggtcaataaaagtgaatgtatttgaactgaatttttaa 13578928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 24203092 - 24203035
Alignment:
Q  309 atcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttt 366  Q
    |||||||||| |||||| ||||| |||||||||||| ||| |||||||| ||||||||    
T  24203092 atcctatttataagagaaatttatgtcaataaaagtggatatatttgatttaaatttt 24203035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 25601123 - 25601059
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  25601123 tccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 25601059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 54735 - 54671
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  54735 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 54671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 2890285 - 2890221
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  2890285 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 2890221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 3304401 - 3304337
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  3304401 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 3304337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 6552662 - 6552726
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  6552662 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 6552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 7785901 - 7785837
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  7785901 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 7785837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 7805822 - 7805758
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  7805822 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 7805758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 8587177 - 8587241
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| | || |||||| ||||||||||||||||   ||||||||||||    
T  8587177 tccggtcctatttataagagaaagtttggtcaacaaaagttgatgtattttgactaaatttttaa 8587241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 12343263 - 12343199
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  12343263 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 12343199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 31654620 - 31654684
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  31654620 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 31654684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 32114598 - 32114534
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  32114598 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 32114534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 43199477 - 43199413
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  43199477 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 43199413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 44498310 - 44498246
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  44498310 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 44498246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 1262322 - 1262265
Alignment:
Q  309 atcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttt 366  Q
    |||||||||| |||||||||||| ||||| ||||||| |||||| |||| ||||||||    
T  1262322 atcctatttagaagagacatttacgtcaacaaaagttaatgtatctgatttaaatttt 1262265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 8437432 - 8437496
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||||||||||  |||||||||  || |||||||||    
T  8437432 tccggtcctatttataagagaaatttaggtcaataaaagtgaatgtatttggactgaatttttaa 8437496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 48340404 - 48340468
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| |||||||||||||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  48340404 tccggtcctatttacaagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 48340468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 9111612 - 9111553
Alignment:
Q  310 tcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||||||| |||||| ||||||||||| ||||||  |||||||||| || |||||||||    
T  9111612 tcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaa 9111553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 428
Target Start/End: Complemental strand, 21295449 - 21295326
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaatcaagtaaatcatcttttactaacctaaatacttc 404  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||| |  || |||| |||||  | |||||||    ||    
T  21295449 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaattagatacatcaacttttgttgacctaaaattctc 21295350  T
Q  405 ttttaaatagaaccggagggagta 428  Q
    || ||||||| |||||||||||||    
T  21295349 ttataaataggaccggagggagta 21295326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 2787961 - 2787891
Alignment:
Q  299 actatttccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||| |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  2787961 actatctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 2787891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 2131779 - 2131734
Alignment:
Q  321 agagacatttaggtcaataaaagttgatgtatttgatctaaatttt 366  Q
    |||||||||| |||||| |||||||||||||| || ||||||||||    
T  2131779 agagacatttgggtcaacaaaagttgatgtatctggtctaaatttt 2131734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 31757428 - 31757477
Alignment:
Q  303 tttccgatcctatttacaagagacatttaggtcaataaaagttgatgtat 352  Q
    ||||||||| |||||| ||||   ||||||||||||||||||||||||||    
T  31757428 tttccgatcatatttataagaagtatttaggtcaataaaagttgatgtat 31757477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 33943056 - 33942991
Alignment:
Q  304 ttccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||||||||||||| || ||| | ||||||||| ||||||| |||||||||  || |||||||||    
T  33943056 ttccgatcctatttataaaagaaagttaggtcaacaaaagttaatgtatttggactgaatttttaa 33942991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 4238601 - 4238665
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  4238601 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 4238665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 10297986 - 10298050
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  10297986 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 10298050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 17653719 - 17653783
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  17653719 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 17653783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 19557175 - 19557111
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  19557175 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 19557111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 22721938 - 22722002
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  22721938 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 22722002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 34080153 - 34080089
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  34080153 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 34080089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 37508928 - 37508992
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  37508928 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 37508992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 44785519 - 44785455
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  44785519 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 44785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 46208037 - 46208101
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  46208037 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 46208101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 49823504 - 49823440
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  49823504 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 49823440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 46968527 - 46968446
Alignment:
Q  337 ataaaagttgatgtatttgatctaaatttttaatcaagtaaatcatcttttactaacctaaatacttcttttaaatagaacc 418  Q
    ||||||||| |||||| ||||| ||||| |||||||| || ||||| ||||||| || |||||| || || |||||||||||    
T  46968527 ataaaagttaatgtatctgatccaaattcttaatcaaatacatcattttttacttacgtaaatatttattataaatagaacc 46968446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 3564285 - 3564225
Alignment:
Q  313 tatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaatcaa 373  Q
    ||||||||||||||||||   |||| ||| |||||||||||||||| || |||||||||||    
T  3564285 tatttacaagagacatttgaatcaacaaaggttgatgtatttgatccaactttttaatcaa 3564225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 11897061 - 11897125
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| | ||||||||| |||||||||||||| ||| || |||||||||    
T  11897061 tccggtcctatttataagagaaagttaggtcaacaaaagttgatgtatctgaactgaatttttaa 11897125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 5392254 - 5392219
Alignment:
Q  320 aagagacatttaggtcaataaaagttgatgtatttg 355  Q
    |||||| |||||||||||||||||||||||||||||    
T  5392254 aagagaaatttaggtcaataaaagttgatgtatttg 5392219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 12043613 - 12043663
Alignment:
Q  307 cgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgat 357  Q
    |||||||||||| || ||| ||||| ||||| |||||||||||||||||||    
T  12043613 cgatcctatttataaaagatatttaagtcaacaaaagttgatgtatttgat 12043663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 14984838 - 14984908
Alignment:
Q  299 actatttccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||| |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  14984838 actatctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 14984908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 9981654 - 9981718
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  9981654 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 9981718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 26471188 - 26471124
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  26471188 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 26471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 27159481 - 27159417
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  27159481 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 27159417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 31842918 - 31842854
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  31842918 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 31842854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 39402089 - 39402025
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  39402089 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 39402025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 44668216 - 44668152
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  44668216 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 44668152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 47216822 - 47216758
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  47216822 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 47216758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 7482232 - 7482296
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||| || |||||||||    
T  7482232 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaa 7482296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 7661085 - 7661129
Alignment:
Q  307 cgatcctatttacaagagacatttaggtcaataaaagttgatgta 351  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||    
T  7661085 cgatcctatttataagagaaatttatgtcaataaaagttgatgta 7661129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 434
Target Start/End: Original strand, 28469490 - 28469617
Alignment:
Q  307 cgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaatcaagtaaatcatcttttactaacctaaatacttctt 406  Q
    ||||| |||||| || ||||||||||||||| ||||||| ||||||  | || ||||| |||||||  || ||||  ||||| | ||||||||  |||||    
T  28469490 cgatcttatttataaaagacatttaggtcaacaaaagttaatgtatcaggtccaaattattaatcagatacatcacattttattgacctaaatgattctt 28469589  T
Q  407 ttaaatagaaccggagggagtaatttat 434  Q
     ||||||  ||| ||||||||| |||||    
T  28469590 ataaatatgaccagagggagtattttat 28469617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 94447 - 94391
Alignment:
Q  299 actatttccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttg 355  Q
    ||||| |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||    
T  94447 actatctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttg 94391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 1565852 - 1565788
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  1565852 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 1565788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 1738570 - 1738506
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  1738570 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 1738506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 7240756 - 7240820
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  7240756 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 7240820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 22285706 - 22285770
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  22285706 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 22285770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 23314262 - 23314198
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  23314262 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 23314198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 31319522 - 31319458
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  31319522 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 31319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 36016319 - 36016255
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  36016319 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 36016255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 36583402 - 36583466
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  36583402 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggacttaatttttaa 36583466  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 38064036 - 38063972
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  38064036 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 38063972  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 46840867 - 46840931
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  46840867 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 46840931  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 45478215 - 45478168
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtat 352  Q
    |||||||||||||| |||||| || | |||||||||||||||||||||    
T  45478215 tccgatcctatttataagagaaatgtgggtcaataaaagttgatgtat 45478168  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 41615796 - 41615735
Alignment:
Q  308 gatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    ||||||||||| |||||| | ||||||||| ||||||| |||||||||  || |||||||||    
T  41615796 gatcctatttataagagaaaattaggtcaacaaaagttaatgtatttggacttaatttttaa 41615735  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 3372128 - 3372192
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  3372128 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 3372192  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 20538809 - 20538745
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  20538809 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 20538745  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 24704377 - 24704441
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  24704377 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 24704441  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 43900556 - 43900620
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  43900556 tccggtcctatttataagagaaatttaggtcaacaaaagtaaatgtatttggactgaatttttaa 43900620  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 47833618 - 47833682
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  47833618 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 47833682  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 47838740 - 47838676
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||||||||||||| |||||| |||| |||||| ||||||  |||||||||  || |||||||||    
T  47838740 tccgatcctatttataagagaaatttcggtcaacaaaagtgaatgtatttggactgaatttttaa 47838676  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 48336270 - 48336334
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  48336270 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 48336334  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 53337377 - 53337441
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  53337377 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 53337441  T

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Target: scaffold1707 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 1342 - 1406
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  1342 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 1406  T

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Target: scaffold0482 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 12867 - 12931
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  12867 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 12931  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 23792 - 23856
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  23792 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 23856  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 49512 - 49576
Alignment:
Q  305 tccgatcctatttacaagagacatttaggtcaataaaagttgatgtatttgatctaaatttttaa 369  Q
    |||| ||||||||| |||||| ||||||||||| ||||||  |||||||||  || |||||||||    
T  49512 tccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaa 49576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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