View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_high_19 (Length: 373)

Name: NF11938_high_19
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_high_19
NF11938_high_19
[»] chr3 (3 HSPs)
chr3 (15-373)||(8112127-8112492)
chr3 (154-373)||(8096052-8096271)
chr3 (16-116)||(8095955-8096055)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 8112127 - 8112492
Alignment:
Q  15 agaagaacttcaaattgatgctatttgcaaatgattttgatatgctttgtaatatgttacttcttgtgttatatgtgtgccttttatagatgaaattttg 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8112127 agaagaacttcaaattgatgctatttgcaaattattttgatatgctttgtagtatgttacttcttgtgttatatgtgtggcttttatagatgaaattttg 8112226  T
Q  115 taactaaaagaatggttaatcaagggtgagttggtggga---tgtacatttaaatatagttagttcaa---cttattgcctataaaataaaatccgtttg 208  Q
     |||| ||||||||||||||||||| ||||||||| |||   ||||||||||||||| ||| ||||||   ||| |||| ||||||||||||||   |||    
T  8112227 caactcaaagaatggttaatcaaggatgagttggtaggattgtgtacatttaaatattgttcgttcaactgcttcttgcttataaaataaaatctaattg 8112326  T
Q  209 gaatcattgttagtaaaccaacctacctacatcaaaaccatatacaaacttc-aatgcattgccaacaaacaatgtttgacctatagtatggttctttga 307  Q
    |||||||||||||| ||||||||||||||||||| |||| ||   ||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  8112327 gaatcattgttagtgaaccaacctacctacatcataaccgtaggtaaacttcaaatgcattgtcaacaaacaatgtttgacccatagtatcgttctttga 8112426  T
Q  308 atttcaagcttaaatattttccagttcttggtctcgaatgctacctacgccttcctactttttaga 373  Q
    |||||||||||||||||  ||||||||||||||  |||||||||||| || |||||||||||||||    
T  8112427 atttcaagcttaaatatagtccagttcttggtcatgaatgctacctaagctttcctactttttaga 8112492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 154 - 373
Target Start/End: Original strand, 8096052 - 8096271
Alignment:
Q  154 tgtacatttaaatatagttagttcaacttattgcctataaaataaaatccgtttggaatcattgttagtaaaccaacctacctacatcaaaaccatatac 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8096052 tgtacatttaaatatagttagttcaacttattgcctataaaataaaatccgtttggaatcattgttagtaaaccaacctacctacatcaaaaccatagac 8096151  T
Q  254 aaacttcaatgcattgccaacaaacaatgtttgacctatagtatggttctttgaatttcaagcttaaatattttccagttcttggtctcgaatgctacct 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8096152 aaacttcaatgcattgccaacaaacaatgtttgacctatagtatggttctttgaatttcaagcttaaatattttccagttcttggtctcgaatgctacct 8096251  T
Q  354 acgccttcctactttttaga 373  Q
    | ||||||||||||||||||    
T  8096252 aagccttcctactttttaga 8096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 8095955 - 8096055
Alignment:
Q  16 gaagaacttcaaattgatgctatttgcaaatgattttgatatgctttgtaatatgttacttcttgtgttatatgtgtgccttttatagatgaaattttgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8095955 gaagaacttcaaattgatgctatttgcaaatgattttgatatgctttgtagtatgttacttcttgtgttatatgtgtgccttttatagatgaaattttgt 8096054  T
Q  116 a 116  Q
    |    
T  8096055 a 8096055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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