View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_high_22 (Length: 343)
Name: NF11938_high_22
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 36331344 - 36331682
Alignment:
| Q |
1 |
ttttatattttatttgagccacctttgaaccccacaagtctaaaaaatgagtctgagacaattttttctgggacaatatattgtgtgagttttttcgtaa |
100 |
Q |
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| T |
36331344 |
ttttatattttatttgagccacctttgaaccccacaagtctaaaaaatgagcctgagacaattttttctgggacaatatattgtgtgagttttttcttaa |
36331443 |
T |
|
| Q |
101 |
ttcaatatattcattcaactaaggacagtgtgtgaaacagactaatcaataaggtttcttcatagagaaggagaaaagaaattgatatagacacccccct |
200 |
Q |
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| T |
36331444 |
ttcaatatattcattcaactaaggacagtgtgtgaaacagactaatcaataaggtttcttcatagagaaggagaaaagaaattgatatagacacccccct |
36331543 |
T |
|
| Q |
201 |
tataaaagatagaaagttgcaaagaggatcatatctgaagaaaaagactggaccctctttctgtcacagcctacaactttagattatattagatattatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331544 |
tataaaagatagaaagttgcaaagaggatcatatctgaagaaaaagactggaccctctttctgtcacagcctacaactttagattatattagatattatt |
36331643 |
T |
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| Q |
301 |
actttgacaacaataagctttgatctttctctgcttctc |
339 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
36331644 |
actttgacaacaataagctttgatctttctttgcttctc |
36331682 |
T |
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