View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_high_25 (Length: 281)

Name: NF11938_high_25
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_high_25
NF11938_high_25
[»] chr2 (5 HSPs)
chr2 (17-281)||(34324864-34325128)
chr2 (17-252)||(29352756-29352994)
chr2 (53-92)||(27717429-27717468)
chr2 (195-252)||(44938120-44938177)
chr2 (53-89)||(27724755-27724791)
[»] chr8 (8 HSPs)
chr8 (17-281)||(4027440-4027704)
chr8 (60-99)||(12646647-12646686)
chr8 (53-93)||(3368290-3368330)
chr8 (53-93)||(14682403-14682443)
chr8 (53-108)||(15338619-15338674)
chr8 (53-108)||(15427684-15427739)
chr8 (53-108)||(15518988-15519043)
chr8 (53-99)||(27183523-27183569)
[»] chr5 (6 HSPs)
chr5 (53-120)||(31777477-31777544)
chr5 (53-118)||(30651131-30651196)
chr5 (192-248)||(30651273-30651329)
chr5 (191-248)||(31777618-31777675)
chr5 (55-93)||(42565447-42565485)
chr5 (52-92)||(43322384-43322424)
[»] chr7 (5 HSPs)
chr7 (44-105)||(30249429-30249490)
chr7 (195-255)||(30249508-30249568)
chr7 (192-251)||(25627898-25627957)
chr7 (53-103)||(25627762-25627812)
chr7 (53-93)||(42445889-42445929)
[»] scaffold0129 (3 HSPs)
scaffold0129 (53-89)||(17614-17650)
scaffold0129 (53-93)||(10008-10048)
scaffold0129 (53-89)||(34010-34046)
[»] chr3 (1 HSPs)
chr3 (53-92)||(2703336-2703375)
[»] chr6 (3 HSPs)
chr6 (191-233)||(13477586-13477628)
chr6 (53-95)||(23216425-23216467)
chr6 (53-93)||(29012458-29012498)
[»] chr4 (2 HSPs)
chr4 (194-252)||(20426310-20426368)
chr4 (196-252)||(4877551-4877607)
[»] scaffold0054 (2 HSPs)
scaffold0054 (53-98)||(33919-33964)
scaffold0054 (53-98)||(40270-40315)
[»] chr1 (2 HSPs)
chr1 (55-92)||(344684-344721)
chr1 (56-101)||(368367-368412)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 34324864 - 34325128
Alignment:
Q  17 agtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtatagattattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34324864 agtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccatgttagagatgactataagattattaggtgtatagattattt 34324963  T
Q  117 tccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaaaatattttacaatactgtatgggagatttatagtttaaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34324964 tccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaaaatattttacaatactgtatgggagatttatagtttaaga 34325063  T
Q  217 tgtaacacttgggaaaaacttgatgtccatatgccttcggatacaaacaaccgtatattaaacac 281  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||| ||||    
T  34325064 tgtaacacttgggaaaaacttgatgtcaatatgccttcggatataaacaaacatatattatacac 34325128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 29352994 - 29352756
Alignment:
Q  17 agtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtatagattattt 116  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||    
T  29352994 agtctgtgtcaccttattggagctctttgatttgtttttatggatttggttatgactgtgttagagatgactataagattattaggcgtctagcttattt 29352895  T
Q  117 tccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatc---ggaaaaaatattttacaatactgtatgggagatttatagttta 213  Q
    |||||||||||||  ||||||| ||||||||||||||| |||||| ||||||||   |||||||||||||||  ||  ||||||||||||||||||||||    
T  29352894 tccattaagtgaagaagatcttctttatctcaatctactagaagatgcgcaatcggaggaaaaaatattttatgatgatgtatgggagatttatagttta 29352795  T
Q  214 agatgtaacacttgggaaaaacttgatgtccatatgcct 252  Q
    |||||||||||||||||||||||||||||| || |||||    
T  29352794 agatgtaacacttgggaaaaacttgatgtcgatctgcct 29352756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 27717468 - 27717429
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataa 92  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  27717468 ttcatggatttggctatgaccatgttagagatgactataa 27717429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 44938177 - 44938120
Alignment:
Q  195 atgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatatgcct 252  Q
    ||||||||||||||| ||||| |||||  ||||| | |||||||||||| ||||||||    
T  44938177 atgggagatttatagcttaaggtgtaattcttggaagaaacttgatgtcaatatgcct 44938120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 27724791 - 27724755
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgacta 89  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  27724791 ttcatggatttggttatgaccatgttcgagatgacta 27724755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 4027440 - 4027704
Alignment:
Q  17 agtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtatagattattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4027440 agtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtctagattattt 4027539  T
Q  117 tccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaaaatattttacaatactgtatgggagatttatagtttaaga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  4027540 tccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaaaatattttatgataatgtatgggagatttatagtttaaga 4027639  T
Q  217 tgtaacacttgggaaaaacttgatgtccatatgccttcggatacaaacaaccgtatattaaacac 281  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| | | ||||||| ||||    
T  4027640 tgtaacacttgggaaaaacttgatgtcaatatgctttcggatacaaaccaacatatattatacac 4027704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 12646647 - 12646686
Alignment:
Q  60 atttggttatgaccgtgttagagatgactataagattatt 99  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12646647 atttggttatgatcgtgttagagatgactataagattatt 12646686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 3368330 - 3368290
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataag 93  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  3368330 ttcatggatttggttatgaccaagttagagatgactataag 3368290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 14682443 - 14682403
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataag 93  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  14682443 ttcatggatttggttatgatcgtgttagagatgattataag 14682403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 15338674 - 15338619
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtata 108  Q
    ||||||||||||||||||||  | ||| |||||||| |||||||||||||| ||||    
T  15338674 ttcatggatttggttatgactatattaaagatgactttaagattattaggtatata 15338619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 15427739 - 15427684
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtata 108  Q
    ||||||||||||||||||||  | ||| |||||||| |||||||||||||| ||||    
T  15427739 ttcatggatttggttatgactatattaaagatgactttaagattattaggtatata 15427684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 15519043 - 15518988
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtata 108  Q
    ||||||||||||||||||||  | ||| |||||||| |||||||||||||| ||||    
T  15519043 ttcatggatttggttatgactatattaaagatgactttaagattattaggtatata 15518988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 27183523 - 27183569
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattatt 99  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| |||||    
T  27183523 ttcatggatttggttatgaccatgtcagagatgactacaaggttatt 27183569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 31777477 - 31777544
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtatagattattttcca 120  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||    
T  31777477 ttcatggatttggttatgaccatgttagagatgactataagattattaggtgtatacatttttttcca 31777544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 30651131 - 30651196
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtatagattattttc 118  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  30651131 ttcatggatttggttatgaccatgttagagatgactataagattattaggtgtatacatttttttc 30651196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 30651273 - 30651329
Alignment:
Q  192 tgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatat 248  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  30651273 tgtatgggagatttatagtttaagatgtaacacttgggaataacttcatgtcgatat 30651329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 31777618 - 31777675
Alignment:
Q  191 ctgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatat 248  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||||    
T  31777618 ctgtatgggagatttatagtctacgatgtaacacttgggaagaacttcatgtcgatat 31777675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 42565485 - 42565447
Alignment:
Q  55 catggatttggttatgaccgtgttagagatgactataag 93  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  42565485 catggatttggttacgactgtgttagagatgactataag 42565447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 43322384 - 43322424
Alignment:
Q  52 tttcatggatttggttatgaccgtgttagagatgactataa 92  Q
    |||||||||||||| ||||| ||||| ||||||||||||||    
T  43322384 tttcatggatttggctatgatcgtgtgagagatgactataa 43322424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 30249429 - 30249490
Alignment:
Q  44 tgatttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgt 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  30249429 tgatttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt 30249490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 30249508 - 30249568
Alignment:
Q  195 atgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatatgccttcg 255  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  30249508 atgggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgccttcg 30249568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 25627898 - 25627957
Alignment:
Q  192 tgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatatgcc 251  Q
    ||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||    
T  25627898 tgtatgggagatttatagtctaagatgtaacacttggaaagaacttcatgtcgatatgcc 25627957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 25627762 - 25627812
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattattaggt 103  Q
    ||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  25627762 ttcatggatttggttatgaccatgctagagatgactataagattatcaggt 25627812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 42445889 - 42445929
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataag 93  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  42445889 ttcatggatttggttatgacagtgttacagatgactataag 42445929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 17650 - 17614
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgacta 89  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17650 ttcatggatttggttatgaccatgttagagatgacta 17614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 10008 - 10048
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataag 93  Q
    |||||||||||||||||||| ||||||| || |||||||||    
T  10008 ttcatggatttggttatgacagtgttagcgacgactataag 10048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 34046 - 34010
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgacta 89  Q
    ||||||||||||||||||| | |||||||||||||||    
T  34046 ttcatggatttggttatgagcatgttagagatgacta 34010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 2703336 - 2703375
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataa 92  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  2703336 ttcatggatttggttatgaccatgttagggatgactataa 2703375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 13477586 - 13477628
Alignment:
Q  191 ctgtatgggagatttatagtttaagatgtaacacttgggaaaa 233  Q
    |||| ||||||||||||||| |||||||||||||||| |||||    
T  13477586 ctgtttgggagatttatagtctaagatgtaacacttgagaaaa 13477628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 23216467 - 23216425
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagat 95  Q
    ||||||||||||||||||||| ||||| | |||||||||||||    
T  23216467 ttcatggatttggttatgaccatgttataaatgactataagat 23216425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 29012458 - 29012498
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataag 93  Q
    ||||||||||||||||||||||||||| | | |||||||||    
T  29012458 ttcatggatttggttatgaccgtgttacaaaagactataag 29012498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 20426310 - 20426368
Alignment:
Q  194 tatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatatgcct 252  Q
    ||||||||||||||||  ||||||||||| |||||  |||||||||| || ||||||||    
T  20426310 tatgggagatttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcct 20426368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 4877551 - 4877607
Alignment:
Q  196 tgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtccatatgcct 252  Q
    ||||||||||||||| ||||| ||||| ||||| | ||||||||| || ||||||||    
T  4877551 tgggagatttatagtctaagaagtaactcttggaagaaacttgatttcaatatgcct 4877607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 33964 - 33919
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattat 98  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||    
T  33964 ttcatggatttggttatgatagtgttatagatgactataaggttat 33919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 40315 - 40270
Alignment:
Q  53 ttcatggatttggttatgaccgtgttagagatgactataagattat 98  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||    
T  40315 ttcatggatttggttatgatagtgttatagatgactataaggttat 40270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 344684 - 344721
Alignment:
Q  55 catggatttggttatgaccgtgttagagatgactataa 92  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  344684 catggatttggttatgaccatgtcagagatgactataa 344721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 368367 - 368412
Alignment:
Q  56 atggatttggttatgaccgtgttagagatgactataagattattag 101  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||    
T  368367 atggatttggttatgattatgttagagatgactataaaattattag 368412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University