View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_high_28 (Length: 252)

Name: NF11938_high_28
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_high_28
NF11938_high_28
[»] chr2 (21 HSPs)
chr2 (1-107)||(18708378-18708484)
chr2 (117-239)||(6799772-6799894)
chr2 (116-239)||(41114755-41114878)
chr2 (117-239)||(29257473-29257595)
chr2 (117-233)||(17148909-17149025)
chr2 (116-239)||(303977-304100)
chr2 (117-234)||(41010624-41010741)
chr2 (116-239)||(12000663-12000787)
chr2 (160-239)||(18299072-18299151)
chr2 (122-234)||(25563084-25563196)
chr2 (118-235)||(13203878-13203995)
chr2 (160-239)||(15651347-15651427)
chr2 (118-208)||(2475944-2476034)
chr2 (116-213)||(17249463-17249560)
chr2 (118-206)||(22572609-22572697)
chr2 (202-239)||(17249458-17249495)
chr2 (160-213)||(45444383-45444436)
chr2 (116-152)||(1542858-1542894)
chr2 (121-194)||(16220919-16220992)
chr2 (181-233)||(25563064-25563116)
chr2 (181-233)||(41010604-41010656)
[»] chr5 (23 HSPs)
chr5 (118-239)||(15675419-15675540)
chr5 (117-239)||(35469009-35469131)
chr5 (118-239)||(14832699-14832820)
chr5 (160-239)||(15504055-15504134)
chr5 (117-239)||(34444072-34444195)
chr5 (118-232)||(7161972-7162086)
chr5 (118-239)||(2476471-2476592)
chr5 (118-227)||(1672375-1672484)
chr5 (160-239)||(30249071-30249150)
chr5 (160-232)||(32953598-32953670)
chr5 (160-239)||(6900873-6900952)
chr5 (118-233)||(13942641-13942755)
chr5 (118-232)||(16567904-16568018)
chr5 (160-233)||(36234485-36234558)
chr5 (118-233)||(12267271-12267385)
chr5 (117-232)||(43228530-43228645)
chr5 (117-206)||(33007025-33007114)
chr5 (117-206)||(34846485-34846574)
chr5 (117-213)||(21069153-21069249)
chr5 (160-229)||(767414-767483)
chr5 (118-208)||(37552051-37552141)
chr5 (118-208)||(37654881-37654971)
chr5 (160-208)||(37607573-37607621)
[»] chr4 (23 HSPs)
chr4 (118-239)||(4728665-4728786)
chr4 (118-239)||(4552292-4552413)
chr4 (119-239)||(10715763-10715883)
chr4 (119-239)||(10929533-10929653)
chr4 (117-239)||(2017324-2017446)
chr4 (117-233)||(52373867-52373983)
chr4 (118-239)||(32005990-32006111)
chr4 (118-239)||(40969331-40969452)
chr4 (118-239)||(46645710-46645831)
chr4 (160-229)||(50099987-50100056)
chr4 (160-235)||(2521828-2521903)
chr4 (119-206)||(10058656-10058743)
chr4 (160-227)||(43003114-43003181)
chr4 (118-237)||(2576281-2576400)
chr4 (118-213)||(25237721-25237816)
chr4 (118-232)||(9003669-9003783)
chr4 (165-233)||(50383987-50384055)
chr4 (160-238)||(1585777-1585855)
chr4 (160-233)||(49745168-49745242)
chr4 (121-206)||(31364254-31364339)
chr4 (121-208)||(32828281-32828368)
chr4 (160-208)||(41972372-41972420)
chr4 (181-233)||(43003156-43003208)
[»] chr8 (13 HSPs)
chr8 (119-239)||(36406378-36406498)
chr8 (160-239)||(3383949-3384028)
chr8 (160-234)||(34282790-34282864)
chr8 (118-239)||(28928166-28928287)
chr8 (121-229)||(27321753-27321861)
chr8 (121-220)||(35384256-35384355)
chr8 (181-233)||(34282832-34282884)
chr8 (130-234)||(13243242-13243346)
chr8 (118-209)||(24965148-24965239)
chr8 (118-208)||(38214863-38214953)
chr8 (198-239)||(39431597-39431638)
chr8 (118-147)||(8968579-8968608)
chr8 (118-146)||(21958802-21958830)
[»] chr6 (17 HSPs)
chr6 (117-239)||(2941329-2941451)
chr6 (160-239)||(9696162-9696241)
chr6 (160-239)||(23663689-23663768)
chr6 (133-239)||(34248916-34249022)
chr6 (119-232)||(10397698-10397811)
chr6 (118-239)||(15122150-15122271)
chr6 (170-228)||(2836107-2836165)
chr6 (120-239)||(15529053-15529172)
chr6 (160-232)||(28614334-28614406)
chr6 (118-239)||(31188200-31188321)
chr6 (160-227)||(14938852-14938919)
chr6 (118-208)||(339476-339566)
chr6 (160-237)||(9046845-9046922)
chr6 (119-224)||(2960794-2960899)
chr6 (167-239)||(31200094-31200166)
chr6 (121-233)||(34188911-34189023)
chr6 (120-206)||(1780933-1781019)
[»] chr1 (17 HSPs)
chr1 (117-239)||(44305518-44305640)
chr1 (118-239)||(14727436-14727557)
chr1 (118-239)||(25007570-25007691)
chr1 (121-239)||(37153881-37153999)
chr1 (162-239)||(4641969-4642046)
chr1 (160-239)||(25011467-25011546)
chr1 (118-239)||(27583905-27584022)
chr1 (117-239)||(1428306-1428428)
chr1 (118-232)||(27460792-27460905)
chr1 (118-232)||(4774085-4774199)
chr1 (119-213)||(33468860-33468954)
chr1 (118-206)||(31844529-31844617)
chr1 (118-206)||(6331804-6331892)
chr1 (198-239)||(44238809-44238850)
chr1 (115-208)||(24646185-24646278)
chr1 (118-213)||(34459253-34459348)
chr1 (160-234)||(48940335-48940409)
[»] chr3 (12 HSPs)
chr3 (119-239)||(14461177-14461297)
chr3 (118-239)||(28311389-28311510)
chr3 (160-239)||(7501068-7501147)
chr3 (117-233)||(41218242-41218358)
chr3 (121-239)||(33178983-33179101)
chr3 (160-239)||(44047696-44047775)
chr3 (118-239)||(12909940-12910059)
chr3 (161-239)||(43700124-43700202)
chr3 (118-206)||(37516766-37516854)
chr3 (121-239)||(53652010-53652128)
chr3 (119-206)||(26370931-26371018)
chr3 (160-208)||(53987974-53988022)
[»] scaffold0618 (1 HSPs)
scaffold0618 (117-239)||(1802-1924)
[»] scaffold0075 (2 HSPs)
scaffold0075 (117-239)||(11630-11752)
scaffold0075 (123-238)||(7018-7132)
[»] chr7 (19 HSPs)
chr7 (117-232)||(22206573-22206688)
chr7 (117-232)||(22228051-22228166)
chr7 (160-239)||(23704399-23704478)
chr7 (116-239)||(35300314-35300437)
chr7 (160-233)||(4843432-4843505)
chr7 (134-229)||(5991324-5991419)
chr7 (118-234)||(28693891-28694007)
chr7 (119-234)||(21932631-21932746)
chr7 (160-225)||(7873150-7873215)
chr7 (118-213)||(814861-814956)
chr7 (118-213)||(3012454-3012549)
chr7 (160-233)||(19377523-19377597)
chr7 (117-204)||(26722846-26722933)
chr7 (160-209)||(38128911-38128960)
chr7 (202-239)||(38128932-38128969)
chr7 (160-233)||(38991107-38991180)
chr7 (211-239)||(3012449-3012477)
chr7 (181-233)||(21932714-21932766)
chr7 (160-208)||(30852447-30852495)
[»] scaffold0638 (1 HSPs)
scaffold0638 (117-206)||(4217-4306)
[»] scaffold0015 (1 HSPs)
scaffold0015 (118-146)||(214018-214046)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18708378 - 18708484
Alignment:
Q  1 acactgaaattccaatatacacnnnnnnnaataatatcatcaagacattttataaacaataaaaagttgtaattaaaagattcatctcttcaatccattt 100  Q
    |||||||||||| |||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18708378 acactgaaattcaaatatacactttttttaataatatcgtcaagacattttataaacaataaaaagttgtaattaaaagattcatctcttcaatccattt 18708477  T
Q  101 ggggttg 107  Q
    |||||||    
T  18708478 ggggttg 18708484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 6799772 - 6799894
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||||||||||||||||||||| ||||       ||||| |||||||||| ||||||||||| |||||| | |||||||||||||||||||    
T  6799772 tcagtggcggagctaggaattttatagagcctgggcaaattttttatcacaaaacgttagttccttcctgcgaataatttcacatttcctgcagataatt 6799871  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  6799872 tcacatttcctacggatatatct 6799894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 41114755 - 41114878
Alignment:
Q  116 gtcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataat 215  Q
    |||||||| ||||| ||||||||||||||||  ||||       |||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||    
T  41114755 gtcagtggaggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcatgcgaataatttcacatttcctgcagataat 41114854  T
Q  216 ttcacatttcctgcggatatatct 239  Q
    |||||||||||| |||||||||||    
T  41114855 ttcacatttcctacggatatatct 41114878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 29257595 - 29257473
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| ||||||||||||||| | ||||       ||||||||||||||||||||||| |||| |||||| | ||||||||||||||||| |    
T  29257595 tcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataagt 29257496  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  29257495 tcacatttcctacggatatatct 29257473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 17149025 - 17148909
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    |||||||||||||||| |||||||| ||||  ||||       ||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  17149025 tcagtggcggagctagaaattttattgagcttgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatt 17148926  T
Q  217 tcacatttcctgcggat 233  Q
     ||||||||||||||||    
T  17148925 ccacatttcctgcggat 17148909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 303977 - 304100
Alignment:
Q  116 gtcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataat 215  Q
    |||||||||||||| || ||||||||||||   ||||       |||||||||||||||||||| |  |||| |||||| | ||||||||||||||||||    
T  303977 gtcagtggcggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcctgcagataat 304076  T
Q  216 ttcacatttcctgcggatatatct 239  Q
    ||||||||||||||||||||||||    
T  304077 ttcacatttcctgcggatatatct 304100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 41010741 - 41010624
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    |||||| ||||||||||||||||||||||   || |       |||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  41010741 tcagtgacggagctaggaattttatagagtgtggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagaaaatt 41010642  T
Q  217 tcacatttcctgcggata 234  Q
    ||||||||||| ||||||    
T  41010641 tcacatttcctacggata 41010624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 12000787 - 12000663
Alignment:
Q  116 gtcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacattt-cctgcagataa 214  Q
    |||||||||||||| ||||||| |||||||||  |||       ||||||||||| ||||| |||||||||| |||||| |||||||| || || |||||    
T  12000787 gtcagtggcggagccaggaattatatagagcctaggcaaaaaaattatcgcaaaatgttacgtccttcctgcgaataattttacattttccggcggataa 12000688  T
Q  215 tttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||||||||    
T  12000687 tttcacatttcctgcggatatatct 12000663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 18299072 - 18299151
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| | |||||||||    
T  18299072 ttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacagatatatct 18299151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 25563196 - 25563084
Alignment:
Q  122 ggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcaca 221  Q
    |||||||| ||||||||||||||||  |||        ||||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||    
T  25563196 ggcggagccaggaattttatagagcttgggaaatttttttatcgcaaaacgttacttcctttctgcaaataatttcatatttcctgcagataatttcaca 25563097  T
Q  222 tttcctgcggata 234  Q
    ||||||| |||||    
T  25563096 tttcctggggata 25563084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 13203995 - 13203878
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||||  | ||       ||||||||||| ||||||||||||| || |||||| | |||||| | |||||||||||    
T  13203995 cagtggcggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattttccgcagataattt 13203896  T
Q  218 cacatttcctgcggatat 235  Q
    |||||||||| |||||||    
T  13203895 cacatttcctacggatat 13203878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 15651427 - 15651347
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacattt-cctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||| ||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||||||| ||||||||||    
T  15651427 ttatcgcaaaatgttacgtccttcctgcgaataattttacattttcctgcggataatttcacatttcctggggatatatct 15651347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 2476034 - 2475944
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    ||||||| |||  ||||||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | |||||||||||    
T  2476034 cagtggcagagtcaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgc 2475944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 17249560 - 17249463
Alignment:
Q  116 gtcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    |||||||||||||  ||||||||||||||| | ||||       |||| |||||||||||||| |||||||| |||||| | ||||||||||| ||||    
T  17249560 gtcagtggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctgcggata 17249463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 22572609 - 22572697
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    |||||||||||| |||||||||||| |||| || |       ||||||||||||||||||| |||||||| |||||| | |||||||||    
T  22572609 cagtggcggagccaggaattttataaagcctggacaaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttcct 22572697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 17249495 - 17249458
Alignment:
Q  202 ttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||  |||||||||||||||||||||||||||||    
T  17249495 ttcctgcgaataatttcacatttcctgcggatatatct 17249458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 45444383 - 45444436
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    |||| ||||||| ||||||||||||||| |||||| | |||||||||| |||||    
T  45444383 ttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagata 45444436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 1542894 - 1542858
Alignment:
Q  116 gtcagtggcggagctaggaattttatagagccagggc 152  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  1542894 gtcagtggcggagccaggaattttatagagcctgggc 1542858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 16220919 - 16220992
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataat 194  Q
    ||||||||| || |||||||||||||| ||||       |||||||||||||||| |||||| ||||| |||||    
T  16220919 tggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataat 16220992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 25563116 - 25563064
Alignment:
Q  181 ttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    |||||||| ||||| | ||||||||||  ||||||||||||||||||| ||||    
T  25563116 ttcctgcagataatttcacatttcctggggataatttcacatttcctgtggat 25563064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 41010656 - 41010604
Alignment:
Q  181 ttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    |||||||| | ||| | ||||||||| | ||||||||||||||||||||||||    
T  41010656 ttcctgcagaaaatttcacatttcctacggataatttcacatttcctgcggat 41010604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 15675540 - 15675419
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||    
T  15675540 cagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtagataattt 15675441  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  15675440 cacatttccttcggatatatct 15675419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 35469131 - 35469009
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    |||||||| |||| ||||||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||    
T  35469131 tcagtggctgagccaggaattttatagagcctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatt 35469032  T
Q  217 tcacatttcctgcggatatatct 239  Q
    |||||||| || |||||||||||    
T  35469031 tcacattttctacggatatatct 35469009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 14832699 - 14832820
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||||||||||| | ||||       |||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  14832699 cagtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataattt 14832798  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  14832799 cacatttcctacggatatatct 14832820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 15504134 - 15504055
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  15504134 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctgcggatatatct 15504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 34444195 - 34444072
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnn-ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataat 215  Q
    |||||||||||||||||||||||| |||||| ||||        |||||||||||||||||||||||||| | |||||| | |||||||||||||||||     
T  34444195 tcagtggcggagctaggaattttagagagcctgggcaaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaa 34444096  T
Q  216 ttcacatttcctgcggatatatct 239  Q
    |||||||||||| |||||||||||    
T  34444095 ttcacatttcctacggatatatct 34444072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 7161972 - 7162086
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||||||||||||| ||||       ||||||||||| ||||||||||||||||||||||| | ||||||||||  ||||||||    
T  7161972 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttcctgtggataattt 7162071  T
Q  218 cacatttcctgcgga 232  Q
    |||||||||||||||    
T  7162072 cacatttcctgcgga 7162086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 2476592 - 2476471
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||| ||||||||| ||||       |||||||||||||||||||||||||| | |||||| | ||||||||||||||||| ||    
T  2476592 cagtggcggagccagaaattatatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaatt 2476493  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  2476492 cacatttcctacggatatatct 2476471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 1672375 - 1672484
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| | |||||| |||||||||||||    
T  1672375 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataattt 1672474  T
Q  218 cacatttcct 227  Q
    ||||||||||    
T  1672475 cacatttcct 1672484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 30249150 - 30249071
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||    
T  30249150 ttatcgcaaaacgttgctttcttcctgcaaataatttcacattttctgcagataatttcacatttcctacggatatatct 30249071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 32953598 - 32953670
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcgga 232  Q
    ||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||    
T  32953598 ttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgcagataatttcacatttcctgcgga 32953670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 6900952 - 6900873
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||| ||| |||||| | ||||||||||| |||||||||||||||| |||||||||||||    
T  6900952 ttatcgcaaaatgttacttccttcatgcgaataatttcacatttcctgcggataatttcacatttcttgcggatatatct 6900873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 13942641 - 13942755
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||||||||||||| |||        |||||||||||||||||||||||||||| |||||| | ||||||||||  ||||| ||    
T  13942641 cagtggcggagccagaaattttatagagcctgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggataa-tt 13942739  T
Q  218 cacatttcctgcggat 233  Q
    ||||||||||||||||    
T  13942740 cacatttcctgcggat 13942755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 16568018 - 16567904
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||  || |||||||||||||  ||||       ||||||||||| |||||||||||||||  |||||| | ||||||||||| ||||||||    
T  16568018 cagtggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcctgcggataattt 16567919  T
Q  218 cacatttcctgcgga 232  Q
    |||||||||||||||    
T  16567918 cacatttcctgcgga 16567904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 36234485 - 36234558
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    ||||||||||| |||||||||||| ||| |||||| | ||||||| ||||||||||||||||||||||||||||    
T  36234485 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcggat 36234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 12267271 - 12267385
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||  ||||||||||||| ||||       |||||||||||||||||||||||||||  |||||| | |||||| |||| ||||| ||    
T  12267271 cagtggcggagccagacattttatagagcctgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggataa-tt 12267369  T
Q  218 cacatttcctgcggat 233  Q
    ||||||||||||||||    
T  12267370 cacatttcctgcggat 12267385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 43228530 - 43228645
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| || |||||||||||||| ||||       | ||||||||| |||||| | ||||||| |||||| | | ||||| |||||||||||    
T  43228530 tcagtggcggagccagaaattttatagagcctgggcaaaaaactaatcgcaaaatgttactcctttcctgcgaataatttcatatttcttgcagataatt 43228629  T
Q  217 tcacatttcctgcgga 232  Q
    ||||||||||||||||    
T  43228630 tcacatttcctgcgga 43228645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 33007114 - 33007025
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||||||||||| ||||||||||||||| | ||||       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  33007114 tcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 33007025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 34846574 - 34846485
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||||||||||| ||||||||||||||||| || |       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  34846574 tcagtggcggagccaggaattttatagagcctggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 34846485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 21069249 - 21069153
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    ||||||| ||||| || |||||||||||| | ||||       |||||||||||||||| |||||||||| ||||||| | ||||||||||||||||    
T  21069249 tcagtggtggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttcctgcagata 21069153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 767483 - 767414
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgc 229  Q
    |||| |||||||||||||| |||||||| |||||| |  ||||| |||| ||||||||||||||||||||    
T  767483 ttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggataatttcacatttcctgc 767414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 37552141 - 37552051
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    |||||| ||||| || |||||||||||||| ||||       |||| |||||| |||||||||||||||| |||||| | |||||||||||    
T  37552141 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcctgc 37552051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 37654971 - 37654881
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    |||||| ||||| || |||||||||||||| ||||       |||| |||||| |||||||||||||||| |||||| | |||||||||||    
T  37654971 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcctgc 37654881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 37607621 - 37607573
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    |||||| |||| ||||||||||||| ||||||||| | |||||||||||    
T  37607621 ttatcgtaaaatgttacttccttccagcaaataatttcacatttcctgc 37607573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 4728786 - 4728665
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  4728786 cagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcaaataatttcacattttctgcagataattt 4728687  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| | |||||||||    
T  4728686 cacatttcctacagatatatct 4728665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 4552413 - 4552292
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||| | ||||       |||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||    
T  4552413 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcctgcagataaatt 4552314  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  4552313 cacatttcctacggatatatct 4552292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 10715883 - 10715763
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||||| ||| ||||||||||||| ||||       |||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||    
T  10715883 agtggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10715784  T
Q  219 acatttcctgcggatatatct 239  Q
    ||||||||| |||||||||||    
T  10715783 acatttcctacggatatatct 10715763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 10929653 - 10929533
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||||| ||| ||||||||||||| ||||       |||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||    
T  10929653 agtggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10929554  T
Q  219 acatttcctgcggatatatct 239  Q
    ||||||||| |||||||||||    
T  10929553 acatttcctacggatatatct 10929533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 2017324 - 2017446
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| |||||||||||| |||| ||||       |||||||||||||||||||||||||| | |||||| | ||||||||| ||||||| |    
T  2017324 tcagtggcggagccaggaattttataaagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctacagataaat 2017423  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  2017424 tcacatttcctacggatatatct 2017446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 52373983 - 52373867
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| ||||||||||||||| | | ||       |||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||    
T  52373983 tcagtggcggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatt 52373884  T
Q  217 tcacatttcctgcggat 233  Q
    ||||||||| |||||||    
T  52373883 tcacatttcatgcggat 52373867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 32006111 - 32005990
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||  | ||||||||||||| | ||||       |||||||||||||||||||||||||| | |||||| | |||||||||||| |||| ||    
T  32006111 cagtggcggagtcatgaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcaaataaatt 32006012  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  32006011 cacatttcctacggatatatct 32005990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 40969452 - 40969331
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    ||||| |||||| || |||||||||||||  ||||       ||||||||||||||||||||||| |||| |||||| | | |||| |||||||||||||    
T  40969452 cagtgacggagccagcaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcatattttctgcagataattt 40969353  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  40969352 cacatttcctacggatatatct 40969331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 46645831 - 46645710
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||| | |||        |||||||||||||||||||||||||||| |||||| | |||||||||| | |||||||    
T  46645831 cagtggcggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtatataattt 46645732  T
Q  218 cacatttcctgcggatatatct 239  Q
    || |||| || |||||||||||    
T  46645731 catattttctacggatatatct 46645710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 50100056 - 50099987
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgc 229  Q
    |||||||||||||||||||||||||| | |||||| | ||||||||||| ||||||||||||||||||||    
T  50100056 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcggataatttcacatttcctgc 50099987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 2521828 - 2521903
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatat 235  Q
    |||||| ||||||||||||||||||||| |||||| | ||||||||||| |||||| |||||||| ||||||||||    
T  2521828 ttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatatcacattttctgcggatat 2521903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 10058743 - 10058656
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  10058743 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 10058656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 43003114 - 43003181
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcct 227  Q
    |||| ||| ||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||    
T  43003114 ttattgcagaacgttacttctttcctgcgaataatttcacatttcctgcagataatttcacatttcct 43003181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 2576400 - 2576281
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| | |||||||||| || | ||||       ||||||||||||||||||||||| |||| | |||| | | |||| |||||||||||||    
T  2576400 cagtggcggagccaagaattttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcgattaatttcatattttctgcagataattt 2576301  T
Q  218 cacatttcctgcggatatat 237  Q
     ||||||||| |||||||||    
T  2576300 tacatttcctacggatatat 2576281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 25237816 - 25237721
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    |||||||||||||||||||| ||||||||  ||||       ||||| |||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  25237816 cagtggcggagctaggaattatatagagcatgggcaaattttttatcacaaaacgttacttccttcctgcgaataatttcacatttcctgcggata 25237721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 9003783 - 9003669
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||  || |||||||||||||| || |       ||||||||||| |||||||||||| ||| |||||| | |||||||||   ||||||||    
T  9003783 cagtggcggagtcagaaattttatagagcctggacaaaaaaattatcgcaaaatgttacttccttcttgcgaataatttcacatttcctatggataattt 9003684  T
Q  218 cacatttcctgcgga 232  Q
    |||||||||||||||    
T  9003683 cacatttcctgcgga 9003669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 50384055 - 50383987
Alignment:
Q  165 gcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    ||||||||||||||||||||||| |||||| ||| | ||||||| ||| |||||||||||||| |||||    
T  50384055 gcaaaacgttacttccttcctgcgaataattttataattcctgcggattatttcacatttcctacggat 50383987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 1585855 - 1585777
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatc 238  Q
    ||||||||||||||| ||| |||| | | |||||| | ||||||||||||||||| || ||||||||| ||||||||||    
T  1585855 ttatcgcaaaacgttgctttcttcgtacgaataatttcacatttcctgcagataaatttacatttcctacggatatatc 1585777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 49745242 - 49745168
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttc-ctgcagataatttcacatttcctgcggat 233  Q
    |||||| |||| ||||| |||||||||| |||||| ||||||||  |||| ||||||||||||||||||||||||    
T  49745242 ttatcgtaaaatgttacgtccttcctgcgaataattttacatttttctgcggataatttcacatttcctgcggat 49745168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 31364339 - 31364254
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||||||| || |||||||||||||  ||||       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  31364339 tggcggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 31364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 32828368 - 32828281
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    ||||||||| || |||||||||| ||| ||||       ||||| |||||  |||||||||||||||||||||| |||||||||||||    
T  32828368 tggcggagccagaaattttatagggcctgggcaaaaaaattatcacaaaatattacttccttcctgcaaataattttacatttcctgc 32828281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 41972372 - 41972420
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    |||||||||||||||||||||||||||| |||||| | |||||| ||||    
T  41972372 ttatcgcaaaacgttacttccttcctgcgaataatttcacattttctgc 41972420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 43003156 - 43003208
Alignment:
Q  181 ttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    |||||||| ||||| | ||||||||| | |||||||| |||||||||||||||    
T  43003156 ttcctgcagataatttcacatttcctaccgataatttaacatttcctgcggat 43003208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 36406378 - 36406498
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||    
T  36406378 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttgcagataatttc 36406477  T
Q  219 acatttcctgcggatatatct 239  Q
    ||||||||| |||||||||||    
T  36406478 acatttcctacggatatatct 36406498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 3383949 - 3384028
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||||||||| | |||||| | || |||||||||||||| |||||||||||| |||||||||||    
T  3383949 ttatcgcaaaacgttacttccttcctacgaataatttcacgtttcctgcagataaattcacatttcctacggatatatct 3384028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 34282790 - 34282864
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggata 234  Q
    |||||||| ||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||| ||||||||    
T  34282790 ttatcgcacaacgttacttccttcctgcgaataatttcacatttcctgcaaataatttcacatttcatgcggata 34282864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 28928287 - 28928166
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| |||||||||| |||| | |||        |||||| |||| |||||||||||||||| |||||| | |||||| |||||||||||||    
T  28928287 cagtggcggagccaggaattttaaagagtctgggtaaaaaatttatcgtaaaaagttacttccttcctgcgaataatttcacattttctgcagataattt 28928188  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| | |||||||||    
T  28928187 cacatttcctacagatatatct 28928166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 27321753 - 27321861
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcac 220  Q
    |||| |||| || |||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| | |||||| ||||||||||||||||    
T  27321753 tggcagagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttcac 27321852  T
Q  221 atttcctgc 229  Q
    || ||||||    
T  27321853 atatcctgc 27321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 35384256 - 35384355
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcac 220  Q
    ||||||||| ||||||||||||||||  ||||       ||||||||||||| |||||||||||| | |||||| | ||||||||| |||||||||||||    
T  35384256 tggcggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttcctccagataatttcac 35384355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 34282832 - 34282884
Alignment:
Q  181 ttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    |||||||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  34282832 ttcctgcaaataatttcacatttcatgcggataatttcacatttcctgcggat 34282884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 13243346 - 13243242
Alignment:
Q  130 taggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgc 229  Q
    |||||||||||||||||| | ||       |||||| ||||||||||||  ||| ||| |||||| | ||||||  || |||||||||||||||||||||    
T  13243346 taggaattttatagagcctgagcaaaaaatttatcgtaaaacgttacttttttcttgccaataatttcacattttgtggagataatttcacatttcctgc 13243247  T
Q  230 ggata 234  Q
    |||||    
T  13243246 ggata 13243242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 24965239 - 24965148
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgca 209  Q
    ||||||| |||| ||||||||||||||||| ||||       |||||||||||| |||||| ||| |||| |||||| | ||||||||||||    
T  24965239 cagtggcagagccaggaattttatagagcctgggcaaaaaatttatcgcaaaaccttactttctttctgcgaataatttcacatttcctgca 24965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 38214953 - 38214863
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    |||||||||||| || |||||||||||||  ||||       ||||||||||| |||||||| ||||||| |||||| | |||||||||||    
T  38214953 cagtggcggagccagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttcctgc 38214863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 39431597 - 39431638
Alignment:
Q  198 acatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  39431597 acatttcctgtagataatttcacatttcatgcggatatatct 39431638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 8968608 - 8968579
Alignment:
Q  118 cagtggcggagctaggaattttatagagcc 147  Q
    ||||||||||||||||||||||||||||||    
T  8968608 cagtggcggagctaggaattttatagagcc 8968579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 21958830 - 21958802
Alignment:
Q  118 cagtggcggagctaggaattttatagagc 146  Q
    |||||||||||||||||||||||||||||    
T  21958830 cagtggcggagctaggaattttatagagc 21958802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 2941451 - 2941329
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||| ||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||| | |||||| | |||||||||||||||||||    
T  2941451 tcagtggtggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataatt 2941352  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  2941351 tcacatttcctacggatatatct 2941329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 9696241 - 9696162
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  9696241 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggatatatct 9696162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 23663689 - 23663768
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||| || |||||||||||    
T  23663689 ttatcgcaaaacgttacttcattcctgcgaataatttcacatttcctgcagataatttcacattttctacggatatatct 23663768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 34248916 - 34249022
Alignment:
Q  133 gaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcgga 232  Q
    ||||||||||||||| ||||       ||||||||||||||||||||||||||||  ||||| | |||||||||||||||||||||| |||| || ||||    
T  34248916 gaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttcctgcagataatttcatattttctacgga 34249015  T
Q  233 tatatct 239  Q
    |||||||    
T  34249016 tatatct 34249022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 10397698 - 10397811
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||| | ||||||||||||||| | ||||       |||||||||||||||||||||||||||| |||||| | ||||||||  |||||||||||    
T  10397698 agtggcggaaccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttccaacagataatttc 10397797  T
Q  219 acatttcctgcgga 232  Q
    ||||||||| ||||    
T  10397798 acatttcctacgga 10397811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 15122271 - 15122150
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||  |||||||||||||||   ||||       ||||||||||||||||||| ||| |||| |||||| | |||||| |||||||||||||    
T  15122271 cagtggcggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattttctgcagataattt 15122172  T
Q  218 cacatttcctgcggatatatct 239  Q
     ||||||||| |||||||||||    
T  15122171 tacatttcctacggatatatct 15122150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 2836107 - 2836165
Alignment:
Q  170 acgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctg 228  Q
    |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||    
T  2836107 acgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctg 2836165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 15529172 - 15529053
Alignment:
Q  120 gtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttca 219  Q
    |||||||||  |||||||||||||||||  |||       |||||||||||| ||||||| ||||| | |||||| | ||||||||||||||||| ||||    
T  15529172 gtggcggagtcaggaattttatagagcctaggcaaaaaatttatcgcaaaacattacttctttcctacgaataatttcacatttcctgcagataaattca 15529073  T
Q  220 catttcctgcggatatatct 239  Q
    |||||||| | |||||||||    
T  15529072 catttcctacagatatatct 15529053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 28614334 - 28614406
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcgga 232  Q
    ||||||||||| |||||||||||||||| |||||| | |||||| |||| |||||||||||||||||| ||||    
T  28614334 ttatcgcaaaatgttacttccttcctgcgaataatttcacattttctgctgataatttcacatttcctacgga 28614406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 31188200 - 31188321
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    ||||| |||||| | ||||||||||||||| ||||       |||||||||||||||||||||||||||  |||||| | |||||| || | ||||||||    
T  31188200 cagtgacggagccatgaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattttctacggataattt 31188299  T
Q  218 cacatttcctgcggatatatct 239  Q
    || |||| ||| ||||||||||    
T  31188300 caaattttctgaggatatatct 31188321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 14938852 - 14938919
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcct 227  Q
    ||||||||||| ||||||| |||||||  |||||| | ||||||||||||||||||||||||||||||    
T  14938852 ttatcgcaaaatgttactttcttcctgggaataatttcacatttcctgcagataatttcacatttcct 14938919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 339566 - 339476
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    ||||||||||||||| |||||||||||||  ||||       ||||||||||| |||||||||||||||||| |||| | |||||||||||    
T  339566 cagtggcggagctagaaattttatagagcttgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttcctgc 339476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 9046845 - 9046922
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatat 237  Q
    |||||| ||||||||| |||||||||   |||||| | |||||||||||||||||||||||||||||| | |||||||    
T  9046845 ttatcggaaaacgttatttccttcctttgaataatttcacatttcctgcagataatttcacatttcctacagatatat 9046922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 2960899 - 2960794
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||||| || |||||||||||||| | ||       |||| |||||| |||||||||||| ||| |||||| | ||||||||||| |||||||||    
T  2960899 agtggcggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttcctgcggataatttc 2960800  T
Q  219 acattt 224  Q
    ||||||    
T  2960799 acattt 2960794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 31200094 - 31200166
Alignment:
Q  167 aaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||||||||||||| |||||| | |||||| |  | |||||||||||||||||||| |||||||||    
T  31200094 aaaacgttacttccttcctgcgaataatttcacattttccacggataatttcacatttcctgcagatatatct 31200166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 34189023 - 34188911
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcac 220  Q
    ||||||||| ||||||||| ||||||| | ||       || |||||||||||||| ||  || ||| |||||| | ||||||||||| |||||||||||    
T  34189023 tggcggagccaggaattttctagagcctgagcaaaaaatttgtcgcaaaacgttacctctctcttgcgaataatttcacatttcctgcggataatttcac 34188924  T
Q  221 atttcctgcggat 233  Q
    |||||||||||||    
T  34188923 atttcctgcggat 34188911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 1780933 - 1781019
Alignment:
Q  120 gtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||| |||| ||||||||||||||| | ||||       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  1780933 gtggcagagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 1781019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 44305640 - 44305518
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||| | |||||| | ||||||||||||||||| |    
T  44305640 tcagtggcggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaat 44305541  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  44305540 tcacatttcctacggatatatct 44305518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 14727557 - 14727436
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  14727557 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattt 14727458  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| | |||||||||    
T  14727457 cacatttcctacagatatatct 14727436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 25007691 - 25007570
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||| | |||||| | ||||||||||||||||| ||    
T  25007691 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaatt 25007592  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  25007591 cacatttcctacggatatatct 25007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 37153881 - 37153999
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcac 220  Q
    ||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||| | |||||| | ||||||||||||||||| |||||    
T  37153881 tggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaattcac 37153980  T
Q  221 atttcctgcggatatatct 239  Q
    ||||||| |||||||||||    
T  37153981 atttcctacggatatatct 37153999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 4641969 - 4642046
Alignment:
Q  162 atcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||| |||||||||||||||||||    
T  4641969 atcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttcatatttcctgcggatatatct 4642046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 25011467 - 25011546
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||||||| ||| |||||| || ||||| ||||||||||||||||||||||| |||||||||||    
T  25011467 ttatcgcaaaacgttacttccttcatgcgaataattttgcattttctgcagataatttcacatttcctacggatatatct 25011546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 27583905 - 27584022
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||||| | ||       ||||||||||||||||||||||    || |||||| | ||||||||||||||||||||    
T  27583905 cagtggcggagccaggaattttatagagcctgagcaaaaaatttatcgcaaaacgttacttcct----gcgaataatttcacatttcctgcagataattt 27584000  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  27584001 cacatttcctacggatatatct 27584022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 1428306 - 1428428
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||| ||||||| ||||||||||||||||| ||||       ||| |||||||||||||||||||||| | |||||| | |||||| |||||||||  |    
T  1428306 tcagtagcggagccaggaattttatagagcctgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataatttcacattttctgcagatagat 1428405  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  1428406 tcacatttcctacggatatatct 1428428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 27460905 - 27460792
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| | ||||||||||||||| |||        |||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  27460905 cagtggcggagccaagaattttatagagcctggg-aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataattt 27460807  T
Q  218 cacatttcctgcgga 232  Q
    |||||||||| ||||    
T  27460806 cacatttcctacgga 27460792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 4774199 - 4774085
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| || |||||||||||| | ||||       ||||||||||| ||||||| |||||||| |||||| | ||||||| ||| ||||||||    
T  4774199 cagtggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgcggataattt 4774100  T
Q  218 cacatttcctgcgga 232  Q
    |||||||||||||||    
T  4774099 cacatttcctgcgga 4774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 33468860 - 33468954
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    ||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | ||||||||| ||||||    
T  33468860 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacagata 33468954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 31844529 - 31844617
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    |||||||||||| ||||||||||||||| | ||||       ||||||||||| |||||||||||||||| |||||| | |||||||||    
T  31844529 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 31844617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 6331892 - 6331804
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    |||||||||| | ||||||||||||||||  | ||       |||||||||||||||||||||||||| |||||||| | |||||||||    
T  6331892 cagtggcggaaccaggaattttatagagcatgagcaaaaaatttatcgcaaaacgttacttccttccttcaaataatttcacatttcct 6331804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 44238809 - 44238850
Alignment:
Q  198 acatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  44238809 acatttcctgcggataatttcacatttcatgcggatatatct 44238850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 24646278 - 24646185
Alignment:
Q  115 ggtcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    ||||||| ||||||| ||||||||||||||||| ||||       ||||| ||||| |||||||||||| ||| |||||| | | |||||||||    
T  24646278 ggtcagttgcggagccaggaattttatagagcctgggcaaaaaaattatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgc 24646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 34459348 - 34459253
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    ||||| |||||| ||||||||||||||| | ||||       ||||| |||||||||||||||||||  | |||||| | ||||||||| ||||||    
T  34459348 cagtgacggagccaggaattttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttcctacagata 34459253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 48940335 - 48940409
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggata 234  Q
    |||| ||||||| ||| ||| || |||| |||||| | ||||||  |||||||||||||||||||||||| ||||    
T  48940335 ttattgcaaaactttatttctttactgcgaataatttcacattttttgcagataatttcacatttcctgcagata 48940409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 14461297 - 14461177
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||||| ||||||||||||||||| ||||       ||||| |||||||||||||||||||| | |||||| ||||||||||||||||||| |||    
T  14461297 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttcctgcagataaattc 14461198  T
Q  219 acatttcctgcggatatatct 239  Q
    ||||||||| |||||||||||    
T  14461197 acatttcctacggatatatct 14461177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 28311510 - 28311389
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||| | ||||       |||||||||||| ||||||||||||| | |||||| | ||||||||||||||||| ||    
T  28311510 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttcctgcagataaatt 28311411  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  28311410 cacatttcctacggatatatct 28311389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 7501147 - 7501068
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  7501147 ttatcgcaaaacgttacttacttcctgcgaataatttcacatttcctgcagataatttcacatttcctacggatatatct 7501068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 41218242 - 41218358
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||  ||||||||||||||| |  |||       |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  41218242 tcagtggcggagtcaggaattttatagagtctaggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatt 41218341  T
Q  217 tcacatttcctgcggat 233  Q
    | |||||||||||||||    
T  41218342 ttacatttcctgcggat 41218358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 33178983 - 33179101
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcac 220  Q
    ||||||||  ||||||||||||||| | ||||       |||||||||||||||||||| ||||||| |||||| | |||||| ||||||||||||||||    
T  33178983 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattttctgcagataatttcac 33179082  T
Q  221 atttcctgcggatatatct 239  Q
    |||| ||||||||||||||    
T  33179083 attttctgcggatatatct 33179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 44047775 - 44047696
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||| ||||| |||||||| | ||||||||||||||||| |||||||||||| |||||||||||    
T  44047775 ttatcgcaaaacgttacttctttcctacaaataatttcacatttcctgcagataaattcacatttcctacggatatatct 44047696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 12910059 - 12909940
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    |||||||||||| ||||||||||||||||| ||||       |||||||||| |||||||||||||| |  |||||| | |||||||||| |||||| ||    
T  12910059 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaatcgttacttccttcccg--aataatttcacatttcctgtagataaatt 12909962  T
Q  218 cacatttcctgcggatatatct 239  Q
    |||||||||| |||||||||||    
T  12909961 cacatttcctacggatatatct 12909940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 43700124 - 43700202
Alignment:
Q  161 tatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||||||||||| || |||| |||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  43700124 tatcgcaaaacgttacttcttttctgcgaataatttcacatttcctgcagataatttcacatttccaacggatatatct 43700202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 37516854 - 37516766
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    |||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  37516854 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 37516766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 53652128 - 53652010
Alignment:
Q  121 tggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcac 220  Q
    ||||||||| ||||||||||||||| | || |       |||||||||||| |||| | |||||| | |||||| | ||||||||||||||||| |||||    
T  53652128 tggcggagccaggaattttatagagtctggacaaaaaatttatcgcaaaacattacgttcttcctacgaataatttcacatttcctgcagataaattcac 53652029  T
Q  221 atttcctgcggatatatct 239  Q
    ||||||| |||||||||||    
T  53652028 atttcctacggatatatct 53652010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 26370931 - 26371018
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||||||||| ||||||||||||||| | ||||       |||||||||||||||||||||||||||| |||||| | |||||||||    
T  26370931 agtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 26371018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 53988022 - 53987974
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    |||| |||||| |||||||||||||||| |||||| | |||||||||||    
T  53988022 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctgc 53987974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 1924 - 1802
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| ||||||||||||||| | ||||       ||||||||||||||||||||||| |||| |||||| | ||||||||||||||||| |    
T  1924 tcagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataagt 1825  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  1824 tcacatttcctacggatatatct 1802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 11752 - 11630
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| |||||||||||||| || ||||       |||||||||||||||||||||||||| | |||||| | ||||||||||||||||| |    
T  11752 tcagtggcggagccaggaattttatagaacctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataaat 11653  T
Q  217 tcacatttcctgcggatatatct 239  Q
    ||||||||||| |||||||||||    
T  11652 tcacatttcctacggatatatct 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 7132 - 7018
Alignment:
Q  123 gcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacat 222  Q
    |||||||||||||||||||||| || ||||       |||||||||| ||||||||||||||| | |||||| ||||||||||||| ||||| |||||||    
T  7132 gcggagctaggaattttatagaacctgggcaaaaaatttatcgcaaa-cgttacttccttcctacgaataattttacatttcctgctgataaattcacat 7034  T
Q  223 ttcctgcggatatatc 238  Q
    ||||| ||||||||||    
T  7033 ttcctacggatatatc 7018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 22206573 - 22206688
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| || |||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| | ||||||||||| ||||||     
T  22206573 tcagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggataatc 22206672  T
Q  217 tcacatttcctgcgga 232  Q
    ||||||||||||||||    
T  22206673 tcacatttcctgcgga 22206688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 22228166 - 22228051
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatt 216  Q
    ||||||||||||| || |||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| | ||||||||||| ||||||     
T  22228166 tcagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggataatc 22228067  T
Q  217 tcacatttcctgcgga 232  Q
    ||||||||||||||||    
T  22228066 tcacatttcctgcgga 22228051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 23704399 - 23704478
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggatatatct 239  Q
    |||||| ||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  23704399 ttatcgtaaaacgttacttctttcttgcgaataattttacatttcctgcagataatttcacatttcctacggatatatct 23704478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 35300314 - 35300437
Alignment:
Q  116 gtcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataat 215  Q
    |||||||||||||| ||||||||||||||||  |||        |||||| ||||||||||||||||| | | |||||| | |||||||||||||||||     
T  35300314 gtcagtggcggagccaggaattttatagagcttgggaaaaaaatttatcgtaaaacgttacttccttcttacgaataatttcacatttcctgcagataaa 35300413  T
Q  216 ttcacatttcctgcggatatatct 239  Q
    |||||||||||| |||||||||||    
T  35300414 ttcacatttcctacggatatatct 35300437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 4843505 - 4843432
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    |||||||||||||||||||| ||||||| |||||| | ||||||||||| ||||||||||||||||||||||||    
T  4843505 ttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcggat 4843432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 5991324 - 5991419
Alignment:
Q  134 aattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgc 229  Q
    |||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  5991324 aattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttcttgcggataatttcacatttcctgc 5991419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 28693891 - 28694007
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataattt 217  Q
    ||||| |||||| ||||||||||||||||| ||||       |||||||||||| |||||||||| |||| |||||| | ||||||||| | ||||||||    
T  28693891 cagtgacggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttcctccggataattt 28693990  T
Q  218 cacatttcctgcggata 234  Q
    ||||  |||||||||||    
T  28693991 cacaaatcctgcggata 28694007  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 21932631 - 21932746
Alignment:
Q  119 agtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttc 218  Q
    ||||||||||  ||||||||||||||| | ||||       ||||||||||| |||||||| ||||||| |||||| | | ||||||||||||||||||     
T  21932631 agtggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcctgcagataatttt 21932730  T
Q  219 acatttcctgcggata 234  Q
    | ||||||||||||||    
T  21932731 atatttcctgcggata 21932746  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 7873150 - 7873215
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttc 225  Q
    ||||||||||| ||||||||||||| || |||||| | ||||||||||| ||||||||||||||||    
T  7873150 ttatcgcaaaatgttacttccttcccgctaataatttcacatttcctgcggataatttcacatttc 7873215  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 814861 - 814956
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    |||||||||||| ||||||| ||||||| | ||||       |||||||||||||||||||| ||||||| |||||| | |||||| |||| ||||    
T  814861 cagtggcggagccaggaattatatagagtctgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattttctgcggata 814956  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 3012549 - 3012454
Alignment:
Q  118 cagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagata 213  Q
    |||||||||||| || |||||||||||| | ||||       |||| ||||||||||||||||||||||  |||||| | ||||||||||| ||||    
T  3012549 cagtggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctgcggata 3012454  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 19377597 - 19377523
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacattt-cctgcagataatttcacatttcctgcggat 233  Q
    ||||||||||| ||||  || ||||||| |||||| | |||||| ||||| ||||||||||||||||||||||||    
T  19377597 ttatcgcaaaatgttatgtctttcctgcgaataatttcacattttcctgcggataatttcacatttcctgcggat 19377523  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 26722846 - 26722933
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttc 204  Q
    |||||||| |||  ||||||||||||||||  ||||       |||||||||||||||||||||||||||| |||||| | |||||||    
T  26722846 tcagtggcagagtcaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 38128911 - 38128960
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgca 209  Q
    |||||||||||||||| |||||||||||| ||||| | ||||||||||||    
T  38128911 ttatcgcaaaacgttatttccttcctgcagataatttcacatttcctgca 38128960  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 38128932 - 38128969
Alignment:
Q  202 ttcctgcagataatttcacatttcctgcggatatatct 239  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  38128932 ttcctgcagataatttcacatttcctgcacatatatct 38128969  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 38991107 - 38991180
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    ||||||||||||||||  | |||||||| |||||| | | ||||||| |  |||||||||||||| ||||||||    
T  38991107 ttatcgcaaaacgttatcttcttcctgcgaataatttcatatttcctacgaataatttcacattttctgcggat 38991180  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 3012477 - 3012449
Alignment:
Q  211 ataatttcacatttcctgcggatatatct 239  Q
    |||||||||||||||||||||||||||||    
T  3012477 ataatttcacatttcctgcggatatatct 3012449  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 21932714 - 21932766
Alignment:
Q  181 ttcctgcaaataatgttacatttcctgcagataatttcacatttcctgcggat 233  Q
    |||||||| ||||| ||| ||||||||| |||||||||||| ||| |||||||    
T  21932714 ttcctgcagataattttatatttcctgcggataatttcacaattcatgcggat 21932766  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 30852495 - 30852447
Alignment:
Q  160 ttatcgcaaaacgttacttccttcctgcaaataatgttacatttcctgc 208  Q
    ||||||||||| ||| |||||||||||| |||||| | |||||||||||    
T  30852495 ttatcgcaaaatgttgcttccttcctgcgaataatttcacatttcctgc 30852447  T

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Target: scaffold0638 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 4306 - 4217
Alignment:
Q  117 tcagtggcggagctaggaattttatagagccagggcnnnnnnnttatcgcaaaacgttacttccttcctgcaaataatgttacatttcct 206  Q
    ||||||||||||| |  |||||||||||||| ||||       ||||||||||| |||||||||||||||| |||||| | |||||||||    
T  4306 tcagtggcggagccataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 4217  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 214018 - 214046
Alignment:
Q  118 cagtggcggagctaggaattttatagagc 146  Q
    |||||||||||||||||||||||||||||    
T  214018 cagtggcggagctaggaattttatagagc 214046  T

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