View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_high_33 (Length: 229)
Name: NF11938_high_33
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_high_33 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 35245222 - 35245447
Alignment:
| Q |
6 |
agtttgttgtaggattcatataaaattgggatgcgaactaaccaacatatatctacagaccattatgctgcttttccaatgtaatgatatcctcaca--a |
103 |
Q |
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| T |
35245222 |
agtttgttgtaggattcatataaaattgggatgcgaactaaccaacatatatctacagaccattatgctgcttttccaatgtaatgatatcctcacacaa |
35245321 |
T |
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| Q |
104 |
aaatggttcatccttatagggaaaactattgaaagtgaagacagtaattcactttcctttaaatttgtctgaaatcatatcaatttcttcaaaaagttat |
203 |
Q |
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| T |
35245322 |
aaatggttcatccttatagggaaaactattgaaagtgaagacagtaattcactttcatttaaatttgtctgaaatcatatcaatttcttcaaaaagttat |
35245421 |
T |
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| Q |
204 |
acaatatgcatcaatcttgtaaaaac |
229 |
Q |
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| T |
35245422 |
acaatatgcatcaatcttataaaaac |
35245447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 35267758 - 35267893
Alignment:
| Q |
63 |
gaccattatgctgcttttccaatgtaatgatatcctcacaaaaatggttcatccttatagggaaaactattgaaagtgaagacagtaattcactttcctt |
162 |
Q |
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| T |
35267758 |
gaccattatgctgctcttccaatatgattataccctcacaaagatgattcatcgttc---gtaaaactactgaaagtgaaaacagcaattcattttcatt |
35267854 |
T |
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| Q |
163 |
taaatttgtctgaaatcatatcaatttcttcaaaaagtt |
201 |
Q |
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| T |
35267855 |
gatatttatccgaaatcatataaatttcttcaaaaagtt |
35267893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 35256369 - 35256402
Alignment:
| Q |
168 |
ttgtctgaaatcatatcaatttcttcaaaaagtt |
201 |
Q |
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| T |
35256369 |
ttgtctgaaatcatatcaattttttcaaaaagtt |
35256402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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