View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_high_34 (Length: 203)

Name: NF11938_high_34
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_high_34
NF11938_high_34
[»] chr2 (6 HSPs)
chr2 (19-167)||(37778577-37778725)
chr2 (19-167)||(22988228-22988376)
chr2 (40-167)||(3246383-3246508)
chr2 (40-167)||(29459826-29459951)
chr2 (122-167)||(26319153-26319198)
chr2 (119-156)||(26321204-26321241)
[»] chr8 (1 HSPs)
chr8 (20-167)||(32208688-32208835)
[»] chr4 (1 HSPs)
chr4 (40-157)||(34738223-34738340)
[»] scaffold0061 (1 HSPs)
scaffold0061 (40-157)||(50326-50445)
[»] scaffold0017 (1 HSPs)
scaffold0017 (40-157)||(148189-148308)
[»] chr6 (1 HSPs)
chr6 (40-167)||(8642181-8642306)
[»] chr3 (1 HSPs)
chr3 (40-167)||(3740721-3740846)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 3e-62; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 37778577 - 37778725
Alignment:
Q  19 atggttacattccaaaattatttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||||||||    
T  37778577 atggttacattccaaaattatttattcctactctatccactttttgcctataaaaaaaattgcattcatagttcgttagacaaattttctacgaagctcc 37778676  T
Q  119 tatgtatatatatttgtaacttattttgtctcttccattccttcaattt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37778677 tatgtatatatatttgtaacttattttgtctcttccattccttcaattt 37778725  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 22988376 - 22988228
Alignment:
Q  19 atggttacattccaaaattatttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcc 118  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||        |||||||||||||||||||| ||||||||||||||||||||    
T  22988376 atggttacattccaaaattatttattcctactctatcgacttcttgcctataaaaaaaattgcattcatagttcgttagacaaattttctacgaagctcc 22988277  T
Q  119 tatgtatatatatttgtaacttattttgtctcttccattccttcaattt 167  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22988276 tatgtatatatatttgtaatttattttgtctcttccattccttcaattt 22988228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 3246383 - 3246508
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaact 139  Q
    |||||||||||||||||| |||||||||||        || |||| ||||||  |||| ||||||||  |||||||| ||||||||||||||||||||||    
T  3246383 ttattcctactctatccattttttgcctataaagaaaattccatttatagtttattaggcaaatttt--acgaagcttctatgtatatatatttgtaact 3246480  T
Q  140 tattttgtctcttccattccttcaattt 167  Q
    ||||||||||||||||||||||||||||    
T  3246481 tattttgtctcttccattccttcaattt 3246508  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 29459826 - 29459951
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaact 139  Q
    |||||||||||||||||| |||||||||||        || |||| ||||||  ||||  |||||||  |||||||| ||||||||||||||||||||||    
T  29459826 ttattcctactctatccattttttgcctataaagaaaattccatttatagtttattaggaaaatttt--acgaagcttctatgtatatatatttgtaact 29459923  T
Q  140 tattttgtctcttccattccttcaattt 167  Q
    |||||| |||||||||||||||||||||    
T  29459924 tattttttctcttccattccttcaattt 29459951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 26319153 - 26319198
Alignment:
Q  122 gtatatatatttgtaacttattttgtctcttccattccttcaattt 167  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  26319153 gtatatatatttgtaagttattttgtctcttccattacttcaattt 26319198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 26321204 - 26321241
Alignment:
Q  119 tatgtatatatatttgtaacttattttgtctcttccat 156  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  26321204 tatgtgtatatatttgtaacttattttatctcttccat 26321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 32208688 - 32208835
Alignment:
Q  20 tggttacattccaaaattatttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcct 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||| |||||||||||||||||||||    
T  32208688 tggttacattccaaaattatttattcctactctatccattttttgcctataaaaaaaattgcattcatagttcgttagacaaattttctacgaagctcct 32208787  T
Q  120 atgtatatatatttgtaacttattttgtctcttccattccttcaattt 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  32208788 atgtatatatatttgtaacttactttgtctcttccattccttcaattt 32208835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 34738340 - 34738223
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcata--gttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaa 137  Q
    ||||||||||||||||||||||||| ||||        |||||||||||  |||  |||| |||||||||||||||||||||||||||||||||||||||    
T  34738340 ttattcctactctatccactttttgtctataaaaaa--ttgcattcatatagtttattagacaaattttctacgaagctcctatgtatatatatttgtaa 34738243  T
Q  138 cttattttgtctcttccatt 157  Q
    ||||||||| ||||||||||    
T  34738242 cttattttgactcttccatt 34738223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 50326 - 50445
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcata--gttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaa 137  Q
    |||||| |||||||||||||||||| ||||        |||||||||||  |||  ||||  ||||||||||||||||||||||||||||||||||||||    
T  50326 ttattcttactctatccactttttgtctataaaaaaatttgcattcatatagtttattagagaaattttctacgaagctcctatgtatatatatttgtaa 50425  T
Q  138 cttattttgtctcttccatt 157  Q
    ||||||||| ||||||||||    
T  50426 cttattttgactcttccatt 50445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 148308 - 148189
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcata--gttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaa 137  Q
    |||||| |||||||||||||||||| ||||        |||||||||||  |||  ||||  ||||||||||||||||||||||||||||||||||||||    
T  148308 ttattcttactctatccactttttgtctataaaaaaatttgcattcatatagtttattagagaaattttctacgaagctcctatgtatatatatttgtaa 148209  T
Q  138 cttattttgtctcttccatt 157  Q
    ||||||||| ||||||||||    
T  148208 cttattttgactcttccatt 148189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 8642306 - 8642181
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaact 139  Q
    |||||||||||||||||| |||||||||||        || |||| ||||||  |||| ||||||||  || ||||| ||||||||||||||||| ||||    
T  8642306 ttattcctactctatccattttttgcctataaagaaaattccatttatagtttattaggcaaatttt--acaaagcttctatgtatatatatttgcaact 8642209  T
Q  140 tattttgtctcttccattccttcaattt 167  Q
    ||||||||||||||||||||||||||||    
T  8642208 tattttgtctcttccattccttcaattt 8642181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 3740846 - 3740721
Alignment:
Q  40 ttattcctactctatccactttttgcctatnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaact 139  Q
    |||||||||||||||||| ||||||| |||        || |||| ||||||  |||| ||||||||  |||||||| ||||||||||||||||||||||    
T  3740846 ttattcctactctatccattttttgcttataaagaaaattccatttatagtttattaggcaaatttt--acgaagcttctatgtatatatatttgtaact 3740749  T
Q  140 tattttgtctcttccattccttcaattt 167  Q
    | |||||||||| |||||||||||||||    
T  3740748 ttttttgtctctcccattccttcaattt 3740721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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