View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_high_6 (Length: 548)
Name: NF11938_high_6
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Complemental strand, 35045963 - 35045445
Alignment:
| Q |
13 |
agatgacaagactacagtaaaaaatgtagtatctttgactttaactttgcagaaatgcttaagttttcataagattaaaatttcacaaactgagacttat |
112 |
Q |
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| T |
35045963 |
agatgacaagactacagtaaaaaatgtagtatctttgactttaactttgcagaaatgcttaagttttcataagattaaaatttcacaaactgagacttat |
35045864 |
T |
|
| Q |
113 |
aaactgttacttgcattgcaggtttcagattcatctcaggaaaaggatcatagagttgatgtaagttttactatgatgtcactatttgtcaattaatgtc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045863 |
aaactgttacttgcattgcaggtttcagattcatctcaggaaaaggatcatagagttgatgtaagttttactatgatgtcactatttgtcaattaatgtc |
35045764 |
T |
|
| Q |
213 |
actttctgaatgtccctaagataaaaggacattcatgttgctgtcactaattcattccagtttagaatcattgtcaaatacagctagatcatattctctt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045763 |
actttctgaatgtccctaagataaaaggacattcatgttgctgtcactaattcattccagtttagaatcattgtcaaatacagctagatcatattctctt |
35045664 |
T |
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| Q |
313 |
tgaaaaaacttgtccttttggttggcttgtgcttaggttctatttgattgattaatattttttcctgcaccttctagagtttgttgcaatagccaacaca |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045663 |
tgaaaaaacttgtccttttggttggcttgtgcttaggttctgtttgattgattaatattttttcctgcaccttctagagtttgttgcaatagccaacaca |
35045564 |
T |
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| Q |
413 |
aaatataatcttttaagagtttgagaatgacttctgaccctcaatgaaaatgactaatagcttatccaattagcttatatatttgagattcttcttaaaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045563 |
aaatataatcttttaagagtttgagaatgacttctgaccctcaatgaaaatgactaatagcttatccaattagcttatatatttgagattcttcttaaaa |
35045464 |
T |
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| Q |
513 |
aacgtgtcatacaattatt |
531 |
Q |
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||||||||||||||||||| |
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| T |
35045463 |
aacgtgtcatacaattatt |
35045445 |
T |
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