View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_10 (Length: 469)
Name: NF11938_low_10
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 49064415 - 49064863
Alignment:
| Q |
1 |
gagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaacaacgaatggggacatggtgtccttgctgatagacgtttaagtacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49064415 |
gagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaacaacgaatggggacatggtgtccttgctgatagacgtttaagtaaata |
49064514 |
T |
|
| Q |
101 |
agaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgtttggctctgtctccnnnnnnnatcatgcgtgattgcatcacttattttt |
200 |
Q |
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| T |
49064515 |
agaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgtttggctctgtctcctttttttatcatgcgtgattgcatcacttattttt |
49064614 |
T |
|
| Q |
201 |
ggtcctcttgatacgcccaaaggccaacaccaaacgataccttattgctcaattccaagactataatgcctcaaatacaatatatgtctgtctctatacg |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49064615 |
ggtcctcttgatacgcccaaaggccaaaaccaaacgataccttattgctcaattccaagactataatgcctcaaatacaatatatgtctgtctctatacg |
49064714 |
T |
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| Q |
301 |
agcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgactactacttgtttgtgttgtgggccatttttatcaatgcatgagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49064715 |
agcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgactactacttgtttgtgttgtgggccatttttatcaatgcatgagt |
49064814 |
T |
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| Q |
401 |
ctttgtctatccagccacccacacggtcatactcatctacagaattttc |
449 |
Q |
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| T |
49064815 |
ctttgtctatccagccacccacacggtcatactcatctacagaattttc |
49064863 |
T |
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