View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_11 (Length: 446)
Name: NF11938_low_11
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 8554744 - 8555161
Alignment:
| Q |
18 |
acaagcaaggagaaaaggttgctacaaagnnnnnnnggaatggaattagtagcaagtgtgcttctttggttaaggagcaacgagctcgtctctacatcgt |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554744 |
acaagcaaggagaaaaggttgctacaaagaaaaaaaggaatggaattagtagcaagtgtgcttctttggttaaggagcaacgagctcgtctctacatcgt |
8554843 |
T |
|
| Q |
118 |
tcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagactagcaacatactctctaacaaactcctcggatttcacctccttttggtctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8554844 |
tcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagactagcaacatactctctaacaaactcctcggatcgcacctccttttggtctt |
8554943 |
T |
|
| Q |
218 |
cctttatagctataaataacacgcggagaagactatagctagcaacacactttctgacactttctttccgaccttttctcttcgtataacctaaagatca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554944 |
cctttatagctataaataacacgcggagaagactataactagcaacacactttctgacactttctttccgaccttttctcttcgtataacctaaagatca |
8555043 |
T |
|
| Q |
318 |
cacttctcaatctctcttcccaaaagatgaaaccttgaagctactcaatatgcataggctgccagcccagttggaatatatggactcttaatttccatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8555044 |
cacttctcaatctctcttcccaaaagatgaaaccttgaagctactcaatatggataggctgccagcccagttggaatatatggactcttaatttccatta |
8555143 |
T |
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| Q |
418 |
tgtatttttcttcccttt |
435 |
Q |
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|||||||||||||||||| |
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| T |
8555144 |
tgtatttttcttcccttt |
8555161 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 48635292 - 48635203
Alignment:
| Q |
78 |
cttctttggttaaggagcaacgagctcgtctctacatcgttcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagact |
167 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| | || || |||||||||||||| || |||| ||| || |||||||| |||| |
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| T |
48635292 |
cttctttggttaaggaacaacgtgctcgtctctacatcttgcgccgctgtgccaccatgctcctctgttcgtatatccaaggagatgact |
48635203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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