View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11938_low_13 (Length: 443)
Name: NF11938_low_13
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 42678052 - 42677856
Alignment:
| Q |
13 |
cagagacagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatac |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42678052 |
cagaaacagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatac |
42677953 |
T |
|
| Q |
113 |
ccagaagcaaagcgacactatcacaagaaattcagaatttatttaacaagtatatccattctagcaacataaaaacacttccagagtaaagaaggga |
209 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42677952 |
ccagaagtaaagagacactatcacaagaaattcagaatttatttaacaagtatatccattctagcaacataaaaacacttccagagtaaagaaggga |
42677856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 42677755 - 42677651
Alignment:
| Q |
300 |
tcacatgaaactcaaaatttgttcttatagcctctgacattctcaaacttactttgatcaacaataagggttttgtgaacacgatcacgaaagtgtgatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42677755 |
tcacatgaaactcaaaatttgttcttatagcctctgacattctcaaacttactttgatcaacaataagggttttgtgaacacgatcacgaaagtgtgatt |
42677656 |
T |
|
| Q |
400 |
gatac |
404 |
Q |
| |
|
||||| |
|
|
| T |
42677655 |
gatac |
42677651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 42677362 - 42677241
Alignment:
| Q |
19 |
cagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatacccagaa |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||| | |||||||||||||||||||||||| |||| |
|
|
| T |
42677362 |
cagtaaagaagggaagataaataaaatatactttcagaaaatcat----------aaagaaa-aaatc-tgataaatttaagaagtaaaaatacctagaa |
42677275 |
T |
|
| Q |
119 |
gcaaagcgacactatcacaagaaattcagaattt |
152 |
Q |
| |
|
|||||| || ||||| ||| |||| ||||||||| |
|
|
| T |
42677274 |
gcaaagagatactatgacatgaaactcagaattt |
42677241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 42677868 - 42677736
Alignment:
| Q |
20 |
agtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaag-aaatagtcataaatttaagaagtaaaaatacccagaa |
118 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||||| |||| ||||||||| ||| |||| | ||||||| ||||||||||||| |||| |
|
|
| T |
42677868 |
agtaaagaagggaggagtaataaaatatactttctgaaaatcattatcaaacgtaaagaaagaaaaaagtc-tgaatttaataagtaaaaatacctagaa |
42677770 |
T |
|
| Q |
119 |
gcaaagcgacactatcacaagaaattcagaattt |
152 |
Q |
| |
|
|||| || | ||||||| |||| ||| ||||| |
|
|
| T |
42677769 |
acaaaaagataatatcacatgaaactcaaaattt |
42677736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 42677258 - 42677183
Alignment:
| Q |
302 |
acatgaaactcaaaatttgttcttatagcctctgacattctcaa--acttactttgatcaacaataagggttttgt |
375 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||| |||| || |||| |||||||||| |||||||| ||||| |
|
|
| T |
42677258 |
acatgaaactcagaatttgttcatatagctactgaccttcttaaacacttcctttgatcaagaataagggctttgt |
42677183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 54704911 - 54704951
Alignment:
| Q |
307 |
aaactcaaaatttgttcttatagcctctgacattctcaaac |
347 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
54704911 |
aaactcagaatttgttcctatagcctctgaccttctcaaac |
54704951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University