View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_14 (Length: 439)
Name: NF11938_low_14
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 7667409 - 7667832
Alignment:
| Q |
1 |
caatagaggagcaacaatgcatgttggctctgaatcagataagaaataaggctcaatccacattcatagggcctacaagactgaatctgaagagagcatt |
100 |
Q |
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| T |
7667409 |
caatagaggagcaacaatgcatgttggctctgaatcagataagaaataaggctcaatccacattcatagggcctacaagactgaatctgaagagagcatt |
7667508 |
T |
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| Q |
101 |
gatgtgacaacagatggagaaggaaacactaacaatgaggaagaatattcaatggaacatggtgagattgggaaggcttatgttaacactcatgtttcat |
200 |
Q |
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| T |
7667509 |
gatgtgacaacagatggagaaggaaacactaacaatgaggaagaatattcaatggaacatggtgagattgggaaggcttatgttaacactcatgtttcat |
7667608 |
T |
|
| Q |
201 |
ggttcaatcaatgaaagagaccctggagttcaagttacacttccacaaaagcccttagaaaccatcaaccacgacgataaagacactcacaaatcgcagg |
300 |
Q |
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| T |
7667609 |
ggttcaatcaatgaaagagaccctggagttcaagttacacttccacaaaagcccttagaaaccatcaaccacgacgataaagacactcacaaatcgcagg |
7667708 |
T |
|
| Q |
301 |
accgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaagttcagttgtggaaataacagtgaagacattg |
400 |
Q |
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| T |
7667709 |
actgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaagttcagttgtggaaataacagtgaagacattg |
7667808 |
T |
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| Q |
401 |
agattatgtgaaagaagaacaaac |
424 |
Q |
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| T |
7667809 |
agattatgtgaaagaagaacaaac |
7667832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 187 - 424
Target Start/End: Original strand, 7087850 - 7088080
Alignment:
| Q |
187 |
cactcatgtttcatggttcaatcaatgaaagagaccctggagttcaagttacacttccacaaaagcccttagaaaccatcaaccacgacgataaagacac |
286 |
Q |
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| T |
7087850 |
cactcatgtttcatggttcaatcaatgaaagagaccctggagttcaagttacacttccacaaaagcccttagaaaccatcaaccacgatgataaagacac |
7087949 |
T |
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| Q |
287 |
tcacaaatcgcaggaccgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaagttcagttgtggaaataa |
386 |
Q |
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| T |
7087950 |
tca-taatcgcaggactgagtttaacattagccggtctcagaagtcaacgttccagccaacagttcgccgttatggtcgcaagttcagttgtggaaa--- |
7088045 |
T |
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| Q |
387 |
cagtgaagacattgagattatgtgaaagaagaacaaac |
424 |
Q |
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| T |
7088046 |
---tgaagacattgagattatgtgaaataagaacaaac |
7088080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 7087638 - 7087825
Alignment:
| Q |
1 |
caatagaggagcaacaatgcatgttggctctgaatcagataagaaataaggctcaatccacattcatagggcctacaagactgaatctgaagagagcatt |
100 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7087638 |
caatagaggagcaacaatgcatgttggttcagaatcagataagaaagaagggtcaatccacattcacagggcctacaagactgaatctgaagagagcatt |
7087737 |
T |
|
| Q |
101 |
gatgtgacaacagatggagaaggaaacactaacaatgaggaagaatattcaatggaacatggtgagattgggaaggcttatgttaaca |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| || |||||||||| |
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| T |
7087738 |
gatgtgacaacagatggagaaggaaacactaacaatgaggaagaagactcaatggaacatggtgaggttgggaaagcatatgttaaca |
7087825 |
T |
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