View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_15 (Length: 404)
Name: NF11938_low_15
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 39077359 - 39076970
Alignment:
| Q |
1 |
tctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagct |
100 |
Q |
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| T |
39077359 |
tctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagct |
39077260 |
T |
|
| Q |
101 |
tccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataaaaatgcagtagaaacaaatgaaatggttattgcagca |
200 |
Q |
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| T |
39077259 |
tccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataataatgcagtagaaacaaatgaaatggttattgcagca |
39077160 |
T |
|
| Q |
201 |
gaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcattcaatcaactattgataatgatgctatag |
300 |
Q |
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| T |
39077159 |
gaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcattcaatcaactattgataatgatgctatag |
39077060 |
T |
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| Q |
301 |
cattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaacaaacaactcaacacagg |
390 |
Q |
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| T |
39077059 |
cattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaacaaacaactcaacacagg |
39076970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 30768385 - 30768268
Alignment:
| Q |
1 |
tctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagct |
100 |
Q |
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|||| ||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||| || || |||||| |||||||||| || | |||| |
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| T |
30768385 |
tctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagct |
30768286 |
T |
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| Q |
101 |
tccaccatggaatccaat |
118 |
Q |
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||| |||||| ||||||| |
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| T |
30768285 |
tcctccatggcatccaat |
30768268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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