View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_16 (Length: 399)
Name: NF11938_low_16
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_16 |
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| [»] scaffold0774 (4 HSPs) |
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| [»] scaffold0442 (2 HSPs) |
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Alignment Details
Target: scaffold0774 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: scaffold0774
Description:
Target: scaffold0774; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 3308 - 3078
Alignment:
| Q |
66 |
ctggtatagtacattc-ttgaccgtgtcctttagactcttataataatgtactacgagagaatcttgaaaatagagggaatagcattgaatggaaatggt |
164 |
Q |
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| T |
3308 |
ctggtatagtacattcattgaccgtgtcctttagactcttataataatgtacaccgagagaatcttgaaaatagagggaatagcattgaatggaaatggt |
3209 |
T |
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| Q |
165 |
aacccaaaagacagatttaaaaagtgcatatattctgatcacactcattctccactttcaccttgtagcagcagcctagcggaagcagtcctagtcctga |
264 |
Q |
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| T |
3208 |
aacccaaaagacagatttaaaaagtgcatatattctgatcacactcattctccactttcaccttgtagca--------------gcagtcctagtcctga |
3123 |
T |
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| Q |
265 |
taggagttctggtcgtggtcctccattctctctctccaccaccac |
309 |
Q |
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| T |
3122 |
taggagttctggtcgtggtcctccattctcttactccaccaccac |
3078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0774; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 3749 - 3700
Alignment:
| Q |
17 |
tgagaaatgatatttgttcgattattgtgacaattttctctcttatattc |
66 |
Q |
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| T |
3749 |
tgagaaatgatatttgttcgattattgtgacaattttctctctcatattc |
3700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0774; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 2993 - 2952
Alignment:
| Q |
335 |
taattaacaagttgtttctacaaccttgagtatttaacaaac |
376 |
Q |
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| T |
2993 |
taattaacaagttgtttctacaaccttgagtatttaaaaaac |
2952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0774; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 3064 - 3033
Alignment:
| Q |
309 |
cattttcattatatatcatcaaggagtaatta |
340 |
Q |
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| T |
3064 |
cattttcattatatatcatcaaggagtaatta |
3033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9869 - 9927
Alignment:
| Q |
1 |
tattggaataattgtatgagaaatgatatttgttcgattattgtgacaattttctctct |
59 |
Q |
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| T |
9869 |
tattggaataattgtatgagaaatgatatttgttcgattattgtgacaactttatctct |
9927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 10358 - 10403
Alignment:
| Q |
67 |
tggtatagtacattc-ttgaccgtgtcctttagactcttataataa |
111 |
Q |
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| T |
10358 |
tggtatagtacatccattgaccgtgtcctttagactcttataataa |
10403 |
T |
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