View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11938_low_17 (Length: 398)
Name: NF11938_low_17
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_17 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 37446832 - 37447225
Alignment:
| Q |
7 |
gtaggtaatttagtttaggagtgaggtgagacttttgcattaaactaggaatgcaccaaactaggtctggaatagatatcaaaagagtgtagaagcaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446832 |
gtaggtaatttagtttaggagtgaggtgagacttttgcattaaactaggaatgcaccaaactaggtctggaatagatatcaaaagagtgtagaagcaaaa |
37446931 |
T |
|
| Q |
107 |
atatatattgccataggggaataaataaaacaaatgcggctcattattaatactt--acaatcttcttgtagagggatcgggtaacatcgcatatgttgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446932 |
atatatattgccataggggaataaataaaacaaatgcagctcattattaatacttacacaatcttcttgtagagggatcgggtaacatcgcatatgttgt |
37447031 |
T |
|
| Q |
205 |
tattcgagtcattaagcagggagataataccaaaataataagggtcgcatttccccagcgattggtagcattgcgctcttgcgatgaaggatcagtatgg |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37447032 |
tattcgcgtcattaagcagggagataataccaaaataataagggtcgcatttccccagcgattggtagcattgcgctcttgcgatgaaggatcagtatgg |
37447131 |
T |
|
| Q |
305 |
g-aattttcaaaatgaaaagttcaccaaaacttctattctgttctacatcacacaatatagggggccacacacactaaaagtgagtgggatgatc |
398 |
Q |
| |
|
| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
37447132 |
gaaattttcagaatgaaaagttcacctaaacttctattctgttctacatcacacaatatagggccacacacacactaaaa-tgagtgggatgatc |
37447225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 37440316 - 37440432
Alignment:
| Q |
240 |
taataagggtcgcatttccccagcgattggtagcattgcgctcttgcgatgaaggatcagtatgggaattttcaaaatgaaaagttcaccaaaacttcta |
339 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||||||||||||| | ||||||||| ||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
37440316 |
taataagagtcgcatttcctcagtgattggtagcattgcgctcttacaatgaaggattcgtatgggaattttcataatgtaaagttcacctaaacttcta |
37440415 |
T |
|
| Q |
340 |
ttctgttctacatcaca |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37440416 |
ctctgttctacatcaca |
37440432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 37440180 - 37440276
Alignment:
| Q |
7 |
gtaggtaa-tttagtttaggagtgaggtgagacttttgcattaaactaggaatg-caccaaactaggtctggaatagatatcaaaagagtgtagaagcaa |
104 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||| |||||||||| |||||| || |||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
37440180 |
gtaggtaagtttagttttggagtgaggtgatactt--gcattaaact-ggaatggcatcaaactag-tcaggaatagatatcaatagagtgtataagcaa |
37440275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University