View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_low_19 (Length: 374)

Name: NF11938_low_19
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_low_19
NF11938_low_19
[»] chr2 (5 HSPs)
chr2 (3-234)||(34325368-34325599)
chr2 (1-234)||(29352218-29352454)
chr2 (233-366)||(34326431-34326564)
chr2 (43-91)||(27589270-27589318)
chr2 (43-91)||(44918414-44918462)
[»] chr8 (2 HSPs)
chr8 (1-234)||(4027959-4028192)
chr8 (233-366)||(4028507-4028640)
[»] chr7 (2 HSPs)
chr7 (1-234)||(30249861-30250097)
chr7 (44-102)||(25628291-25628349)
[»] chr4 (1 HSPs)
chr4 (234-361)||(28110914-28111041)
[»] chr3 (1 HSPs)
chr3 (234-361)||(24837208-24837335)
[»] chr5 (2 HSPs)
chr5 (44-102)||(30651666-30651724)
chr5 (44-102)||(31778012-31778070)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 34325368 - 34325599
Alignment:
Q  3 ctcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  34325368 ctcttcactattggaccttttcccttctacattgagagacttattggagcaaggaggaatggtgatatatttttcgaaaaaaaagatgaaaaaatagtct 34325467  T
Q  103 gctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtga 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34325468 gctatgatttaagtacacacatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtga 34325567  T
Q  203 atcattagttggttttcttgttctcaactaag 234  Q
    ||||||||||||||||||||||||||||||||    
T  34325568 atcattagttggttttcttgttctcaactaag 34325599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 29352454 - 29352218
Alignment:
Q  1 aactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt-tttcaaaaaagaagatgaaaaaatag 99  Q
    |||||||||||||||||||||| |||| ||||||| ||  || |||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  29352454 aactcttcactattggacctttgccctcctatattcaggaacctattggagtagggaggaatggtgatatattctttcaaaaaa-aagataaaaaaatag 29352356  T
Q  100 tctgctatgatttaagtacacgcatggttg---aggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatc 196  Q
    ||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  29352355 tctgctatgatttaagtacacgcatggttgaggaggaacttggtcttgaagaagcaccatcaaatagaataatttacaagaaagagtggtttgacaaatc 29352256  T
Q  197 cagtgaatcattagttggttttcttgttctcaactaag 234  Q
    || | |   ||||||||||||||||||||| |||||||    
T  29352255 caataacagattagttggttttcttgttctaaactaag 29352218  T

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Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 233 - 366
Target Start/End: Original strand, 34326431 - 34326564
Alignment:
Q  233 agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag 332  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34326431 agtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag 34326530  T
Q  333 cctccctgctgtcctgcttctttacacctatgct 366  Q
    |||| |||||||||||||||||| ||||| ||||    
T  34326531 cctcgctgctgtcctgcttctttgcacctgtgct 34326564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 27589318 - 27589270
Alignment:
Q  43 ttattggagcagggaggaatggtgatatatttttcaaaaaagaagatga 91  Q
    ||||||||||||||  ||| |||||||||||||| |||||||| |||||    
T  27589318 ttattggagcaggggagaagggtgatatattttttaaaaaagatgatga 27589270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 44918462 - 44918414
Alignment:
Q  43 ttattggagcagggaggaatggtgatatatttttcaaaaaagaagatga 91  Q
    |||| ||||||||||  |||||||||||||||||| ||||| |||||||    
T  44918462 ttatcggagcagggaaaaatggtgatatatttttccaaaaaaaagatga 44918414  T

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Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4027959 - 4028192
Alignment:
Q  1 aactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||    
T  4027959 aactcttcactattggaccttttcccttctctattgagagacctattggagcagggaggaatggtgatatattcttcaaaaaaaaaggtaaaaaaatagt 4028058  T
Q  101 ctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagt 200  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4028059 ctgctatgatttaagcacacacatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaattccagt 4028158  T
Q  201 gaatcattagttggttttcttgttctcaactaag 234  Q
     |||||||||||||||||||||||||||||||||    
T  4028159 aaatcattagttggttttcttgttctcaactaag 4028192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 233 - 366
Target Start/End: Original strand, 4028507 - 4028640
Alignment:
Q  233 agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag 332  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |    
T  4028507 agtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacgg 4028606  T
Q  333 cctccctgctgtcctgcttctttacacctatgct 366  Q
    |||| |||||||||||||||||| ||||| ||||    
T  4028607 cctcactgctgtcctgcttctttgcacctgtgct 4028640  T

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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30249861 - 30250097
Alignment:
Q  1 aactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttc-aaaaaagaa--gatgaaaaaat 97  Q
    |||||||||||||||||||||| |||| ||||||||||  || |||||||| ||||| ||||||||||||||| ||| |||||| ||  |||| |||| |    
T  30249861 aactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttcgaaaaaataaacgatggaaaatt 30249960  T
Q  98 agtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatcc 197  Q
    ||||||||||||||||||||||| |||| |||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||      
T  30249961 agtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccaccatcaaatagaataacttacaagaaaaagtggtttatcgaattg 30250060  T
Q  198 agtgaatcattagttggttttcttgttctcaactaag 234  Q
      | |  |||||||||||||||||||| |||||||||    
T  30250061 gatcacacattagttggttttcttgttttcaactaag 30250097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 25628291 - 25628349
Alignment:
Q  44 tattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct 102  Q
    ||||||||||||||| |||||||||||||| ||||||  || ||||| |||| ||||||    
T  25628291 tattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtct 25628349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 361
Target Start/End: Complemental strand, 28111041 - 28110914
Alignment:
Q  234 gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc 333  Q
    |||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| ||||||||||||||||||||    
T  28111041 gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc 28110942  T
Q  334 ctccctgctgtcctgcttctttacacct 361  Q
    |||  ||||||||||||||||| |||||    
T  28110941 ctcattgctgtcctgcttctttgcacct 28110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 361
Target Start/End: Original strand, 24837208 - 24837335
Alignment:
Q  234 gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc 333  Q
    |||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| ||||||||||||||||||||    
T  24837208 gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc 24837307  T
Q  334 ctccctgctgtcctgcttctttacacct 361  Q
    |||  ||||||||||||||||| |||||    
T  24837308 ctcattgctgtcctgcttctttgcacct 24837335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 30651666 - 30651724
Alignment:
Q  44 tattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct 102  Q
    ||||||||||||||| |||||||||||||| ||||||  || ||||| |||| ||||||    
T  30651666 tattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtct 30651724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 31778012 - 31778070
Alignment:
Q  44 tattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct 102  Q
    ||||||||||||||| |||||||||||||| ||||||  || ||||| |||| ||||||    
T  31778012 tattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtct 31778070  T

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