View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_27 (Length: 273)
Name: NF11938_low_27
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 27080634 - 27080878
Alignment:
| Q |
19 |
cattcgatacctactattaacccacatcaaaacgtgacttttcttaacaatttatgcttaaacaatgttttataaaactatacaaactcagccaagtgat |
118 |
Q |
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| T |
27080634 |
cattcgatacctactattaacccacatcaaaacgtgacttttcttaacaatttatgcttaaacattgttctataaaactatacaaactcagccaagtgat |
27080733 |
T |
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| Q |
119 |
acannnnnnnaat---tactttctacatgcaagtcagcttctgactataactatataatcttattaagcattaaaattataatctatgaacatagtttca |
215 |
Q |
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||| ||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27080734 |
acatttttctaatcattactttctatatgcaaggcagcttctgactataactacataatcttattaagcattaaaattataatctatgaacatagcttca |
27080833 |
T |
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| Q |
216 |
ttcaagtgtcaactatatttctcggtaacatttacaacatgatgt |
260 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27080834 |
ttcaagtgtcaactatatttctcagtaacatttacaacatgatgt |
27080878 |
T |
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