View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_3 (Length: 666)
Name: NF11938_low_3
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Original strand, 53007489 - 53008018
Alignment:
| Q |
17 |
aaaatgtatataattagattgtaattcaaataaataagtgatttgtcccaagtagttaattagttctatcaaataaacgaattgttcggaagaatttgag |
116 |
Q |
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| T |
53007489 |
aaaatgtatataattagattgtaattcaaataaataagtgatttgtctcaagtagttaattagttctatcaaataa-cgaattgttcggaagaatttaag |
53007587 |
T |
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| Q |
117 |
tttgattcttaaataaaacaatcatagattagattttatttatctttcaaccaaactttagactattagagtcnnnnnnnacctaagaaacggatgatta |
216 |
Q |
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| T |
53007588 |
ttcgattcttaaataaaacaatcatagattagattttatttatctttcaaccaaactttagactattagagtctttttttacctaagaaacggatgatta |
53007687 |
T |
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| Q |
217 |
tcatnnnnnnnttgtgattcaaataagattggaccagccaccaaactcatattcttattcaaccaattgaattggcctattcaattatatgaaatattgg |
316 |
Q |
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| T |
53007688 |
tcgtaaaaaaattgtgattcaaataagattggaccagctaccaaactcatattcttattcaaccaattgaattggcctattcaattatatgaaatattgg |
53007787 |
T |
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| Q |
317 |
tgcgaagtccaaactataggctttcttaaaggctgtggtcttaaatttgggtgccatataaatcatctaagattctaaagcactatattaggatgctggg |
416 |
Q |
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| T |
53007788 |
tgcgaagtacaaactataggctttcttaaaggcagtggtcttaaatttgggtgccatataaatcatctaagattctaaagcactatattaggatgctggg |
53007887 |
T |
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| Q |
417 |
ccctatgatggttactcatcaggtaacaacgtgtagtggacaagtttcactcatccaccattcaggtgtagttttacaatattcgtcaaataaatttgcg |
516 |
Q |
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| T |
53007888 |
ccctacgatggttactcatcaggtgacaacgtgtagtggacaaatttcactgatccaccattctggtgtagttttacgatattcggcaaataaatttgga |
53007987 |
T |
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| Q |
517 |
ttaaatatatttttggtctctacaattatat |
547 |
Q |
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| T |
53007988 |
ttaaatatatttttgatctctataaatatat |
53008018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 53008085 - 53008122
Alignment:
| Q |
610 |
aagggatatatttagatgttcatgtgttttgtatgtcc |
647 |
Q |
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| T |
53008085 |
aaggaatatatttagatgttcatgtgttttgtatgtcc |
53008122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 17008178 - 17008243
Alignment:
| Q |
71 |
gttaattagttctatcaaataaacgaattgttcggaagaatttgagtttgattcttaaataaaacaat |
138 |
Q |
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| T |
17008178 |
gttaatgagttctaccaaata--cgaattgttcagaaaaatttgaatttgattcttgaataaaacaat |
17008243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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