View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_low_35 (Length: 215)

Name: NF11938_low_35
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_low_35
NF11938_low_35
[»] chr4 (11 HSPs)
chr4 (1-116)||(3671387-3671502)
chr4 (1-107)||(52983318-52983424)
chr4 (4-103)||(55636898-55636997)
chr4 (1-103)||(54861216-54861318)
chr4 (4-103)||(54629891-54629990)
chr4 (48-103)||(55626789-55626844)
chr4 (1-103)||(55619438-55619540)
chr4 (1-103)||(55657788-55657890)
chr4 (39-103)||(55664063-55664127)
chr4 (53-103)||(51316255-51316305)
chr4 (14-103)||(50190412-50190501)
[»] chr8 (1 HSPs)
chr8 (1-103)||(9891185-9891287)
[»] chr2 (1 HSPs)
chr2 (1-102)||(13403306-13403407)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 3671387 - 3671502
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671387 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 3671486  T
Q  101 ctgtatctgctctctg 116  Q
    |||||||| |||||||    
T  3671487 ctgtatctactctctg 3671502  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 52983318 - 52983424
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    |||||||||||||||||||||| ||||| |||  | |||||||||| |||| ||||||||||||||| || || ||||||||||||||||||||||||||    
T  52983318 tagcattagagagtgcccatgcagcttcttttttaatgtcaaactcggcatattgaagaagattgactaggggagcaatcagaccagcttcaataacagc 52983417  T
Q  101 ctgtatc 107  Q
    |||||||    
T  52983418 ctgtatc 52983424  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 55636997 - 55636898
Alignment:
Q  4 cattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 103  Q
    ||||| ||||||||||||| ||||| |||  | |||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  55636997 cattaaagagtgcccatgcagcttcttttgcaatgtcaaactcggcattttgaagaagattgactaggggggcaatcagactagcttcaataacagcctg 55636898  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 54861216 - 54861318
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    ||||||||| |||||||||||| ||||| |||  | |||||||||| |||||||||||||||||||| || || ||||||| |||||||||||| |||||    
T  54861216 tagcattagtgagtgcccatgcagcttcttttttaatgtcaaactcagcattttgaagaagattgactaggggagcaatcaaaccagcttcaatgacagc 54861315  T
Q  101 ctg 103  Q
    |||    
T  54861316 ctg 54861318  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 54629990 - 54629891
Alignment:
Q  4 cattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 103  Q
    |||||| |||||||  |||  ||||||||  | |||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  54629990 cattagtgagtgcctgtgcaacttcctttgtaatgtcaaactctgcattttgaagaagattgactaggggagcaatcagaccagcttcaataacagcctg 54629891  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 55626789 - 55626844
Alignment:
Q  48 gcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 103  Q
    |||||||||||||||||||| || || ||||||||||||||||| |||||||||||    
T  55626789 gcattttgaagaagattgactaggggagcaatcagaccagcttcgataacagcctg 55626844  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55619438 - 55619540
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    ||||||||  |||||||||||| ||||| |||  | |  ||| ||| |||||||||||||||||||| || || ||||||||||||||||  ||||||||    
T  55619438 tagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgactaggggagcaatcagaccagctttgataacagc 55619537  T
Q  101 ctg 103  Q
    |||    
T  55619538 ctg 55619540  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55657788 - 55657890
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    ||||||||  |||||||||||| ||||| |||  | |  ||| ||| |||||||||||||||||||| || || ||||||||||||||||  ||||||||    
T  55657788 tagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgactaggggagcaatcagaccagctttgataacagc 55657887  T
Q  101 ctg 103  Q
    |||    
T  55657888 ctg 55657890  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 55664063 - 55664127
Alignment:
Q  39 tcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 103  Q
    ||||| || ||||||||||||||||| || || || ||||| |||||||||||||||||||||||    
T  55664063 tcaaaatcggcattttgaagaagatttactaggggagcaattagaccagcttcaataacagcctg 55664127  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 51316305 - 51316255
Alignment:
Q  53 ttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 103  Q
    ||||||||||| |||||| || ||||| |||||||||||||||||||||||    
T  51316305 ttgaagaagatcgaccaggggagcaatgagaccagcttcaataacagcctg 51316255  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 50190412 - 50190501
Alignment:
Q  14 tgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 103  Q
    ||||||||| ||||| |||  | |||||||||| ||||||||||||||  |||| || || ||||| ||||| || ||||||||||||||    
T  50190412 tgcccatgcagcttcttttttaatgtcaaactctgcattttgaagaagtctgacaagtggagcaataagaccggcatcaataacagcctg 50190501  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9891287 - 9891185
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891287 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 9891188  T
Q  101 ctg 103  Q
    |||    
T  9891187 ctg 9891185  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13403407 - 13403306
Alignment:
Q  1 tagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagc 100  Q
    ||||||| |||||||||||||| ||||| |||  | ||||||| || |||||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  13403407 tagcattggagagtgcccatgcagcttcttttttaatgtcaaattcggcattttgaagaagattgaccagaggagcaatcagtccggcttcaataacagc 13403308  T
Q  101 ct 102  Q
    ||    
T  13403307 ct 13403306  T

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