View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_4 (Length: 661)
Name: NF11938_low_4
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Complemental strand, 36938151 - 36937529
Alignment:
| Q |
13 |
agatgaaatagttttgaatatgtgactctacctagactgtctttctcgtacctcgtgagttggaggacttggttgtcatggtagacatcacctgaaaatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36938151 |
agatgaaatagttttgaatatgtgactctacctagactgtctttctcgtacctcgtgagttggaggacttggttgtcatggtagacatcacctgaaaaat |
36938052 |
T |
|
| Q |
113 |
ttaaagcatgtgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36938051 |
ttaaagcatgtgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaa |
36937952 |
T |
|
| Q |
213 |
gaaagcaagaagatgaggtttcatatagttgttgcaagacgatgccataactgaaaattttatgttgtggaaataatggaaccatacaaaatggcgtggc |
312 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36937951 |
gaaagcaagaagatgaggtttcatata---gttgcaagacgatgccataactgaaaattttatgttgtggaaataatggaaccatacaaaatggcatggc |
36937855 |
T |
|
| Q |
313 |
atggagtggttatgtgtatgtagtagatattagttaattactaatagggaagattacttgcttgtgttgggtggtggaattaatcaatgagtttaccttt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36937854 |
atggagtggttatgtgtatgtagtagatattagttaa-tactaatagggaagattacttgcttgtgttgggtggtggaattaatcaatgagtttaccttt |
36937756 |
T |
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| Q |
413 |
gaattattatggtaacgggtcaatccgtttgagtacgatgtttcaatgaatccgtccacgtt-atgtaaaaatgatccacgttttcaaaattcatttgct |
511 |
Q |
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| T |
36937755 |
gaattagtatggtaacgggtcaatccgtttgagtacgatgtttcaatgaatccgtccacgttaatgtaaaaatgatccacgttttcaaaattcatttgct |
36937656 |
T |
|
| Q |
512 |
tcattttatacaacacgacctgaacgataacttgttcaaaatacatgtcggataatttgtttatacttttattgatgaatgccaacttgtgccttcaaat |
611 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||| |
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| T |
36937655 |
tcattttatacaacacgacctgaatgataacttgttcaaaatacatgtcggataatttgtttatatttttattgatgaatgctaatctgtgccctcaaat |
36937556 |
T |
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| Q |
612 |
gacacatgttaacaaattcattataga |
638 |
Q |
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| T |
36937555 |
gacacatgttaacaaactcattataga |
36937529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 36948398 - 36948178
Alignment:
| Q |
13 |
agatgaaatagttttgaatatgtgactctacctagactgtctttctcgtacctcgtgagttggaggacttggttgtcatggtagacatcacctgaaaatt |
112 |
Q |
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|||||||| | |||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||| || ||||||||||||||| | |
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| T |
36948398 |
agatgaaacaattttgaatatgtgactctgcctagactgtctttctcataatttgtgagttggaggacttggttgtcttgagagacatcacctgaaatat |
36948299 |
T |
|
| Q |
113 |
ttaaagcatgtgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaa |
212 |
Q |
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| || | || ||||||||||| || ||| | ||||||||||| | ||||||||||||| ||||||||||||||||| ||| || || |||||||||||| |
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| T |
36948298 |
tgaaggtatttgttttgtcaccaccaagttgttcatagttgaatgataatggagctgcacgagatgttacaagaagcaagaatgttaatgttacatgaaa |
36948199 |
T |
|
| Q |
213 |
gaaagcaagaagatgaggttt |
233 |
Q |
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|||||||||||| |||||||| |
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| T |
36948198 |
gaaagcaagaaggtgaggttt |
36948178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 36958532 - 36958241
Alignment:
| Q |
13 |
agatgaaatagttttgaatatgtgactctacctagactgtctttctcgtacctcgtgagttggaggacttggttgtcatggtagacatcacctgaaaatt |
112 |
Q |
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|||||||| | |||||||||||||||||| |||||||||| || || ||| | ||||||||||||||||||||||| || ||||||||||||||| | |
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| T |
36958532 |
agatgaaacaattttgaatatgtgactctgcctagactgtgttccttatactttgtgagttggaggacttggttgtcttgagagacatcacctgaaatat |
36958433 |
T |
|
| Q |
113 |
ttaaagcatgtgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaa |
212 |
Q |
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| || | || ||||||||||| || ||| | ||||||||||| | ||||||||||||| ||||||||||||||||| ||| || || ||| |||||||| |
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| T |
36958432 |
tgaaggtatttgttttgtcaccaccaagttgttcatagttgaatgataatggagctgcacgagatgttacaagaagcaagaatgttaatgtaacatgaaa |
36958333 |
T |
|
| Q |
213 |
gaaagcaagaagatgaggtttcatatagttgttgcaagacgatgccataactgaaaattttatgtt--gtggaaataatggaaccatacaaaatg |
305 |
Q |
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|||||||||||||||||||| | | |||| |||||| |||||||||| || |||||| || || ||||||||||||||| |||||||||| |
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| T |
36958332 |
gaaagcaagaagatgaggtt---tgtgattgtagcaagatgatgccataattgtaaatttgatattgggtggaaataatggaattatacaaaatg |
36958241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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