View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11938_low_5 (Length: 605)

Name: NF11938_low_5
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11938_low_5
NF11938_low_5
[»] chr5 (31 HSPs)
chr5 (17-588)||(2468374-2468944)
chr5 (418-481)||(11457148-11457210)
chr5 (420-528)||(2880506-2880614)
chr5 (419-556)||(32172629-32172764)
chr5 (458-522)||(17258880-17258944)
chr5 (450-528)||(5284437-5284515)
chr5 (438-528)||(17368679-17368768)
chr5 (458-528)||(40205071-40205141)
chr5 (419-503)||(11700337-11700420)
chr5 (458-518)||(12521541-12521601)
chr5 (458-522)||(32408589-32408653)
chr5 (458-522)||(36774704-36774768)
chr5 (458-517)||(985627-985686)
chr5 (458-528)||(1899157-1899227)
chr5 (424-522)||(7674657-7674754)
chr5 (458-556)||(10272428-10272525)
chr5 (458-516)||(14295521-14295579)
chr5 (462-528)||(15074750-15074816)
chr5 (458-528)||(18543194-18543263)
chr5 (458-528)||(28982013-28982083)
chr5 (419-517)||(30217096-30217192)
chr5 (424-522)||(37611179-37611276)
chr5 (424-522)||(37787909-37788006)
chr5 (418-495)||(6109519-6109595)
chr5 (444-517)||(36542266-36542338)
chr5 (428-477)||(38047847-38047895)
chr5 (470-522)||(10798421-10798473)
chr5 (458-522)||(12242707-12242771)
chr5 (465-517)||(28413288-28413340)
chr5 (468-548)||(29588863-29588942)
chr5 (458-498)||(37794695-37794735)
[»] chr8 (31 HSPs)
chr8 (424-524)||(14949873-14949972)
chr8 (425-556)||(5088824-5088957)
chr8 (418-522)||(11813063-11813166)
chr8 (458-522)||(20672759-20672823)
chr8 (427-522)||(30191108-30191202)
chr8 (425-498)||(34849136-34849209)
chr8 (458-522)||(25869263-25869327)
chr8 (424-528)||(39551173-39551276)
chr8 (458-521)||(3254235-3254298)
chr8 (459-517)||(42370359-42370417)
chr8 (437-518)||(10062118-10062198)
chr8 (458-522)||(29169094-29169158)
chr8 (462-522)||(30277246-30277306)
chr8 (458-522)||(33553249-33553313)
chr8 (424-511)||(6950342-6950428)
chr8 (419-522)||(11569416-11569518)
chr8 (458-517)||(11795106-11795165)
chr8 (459-522)||(28769337-28769400)
chr8 (423-522)||(42215269-42215367)
chr8 (419-522)||(43504760-43504862)
chr8 (458-556)||(12361168-12361265)
chr8 (443-509)||(29589949-29590013)
chr8 (424-482)||(29890844-29890901)
chr8 (458-528)||(38421267-38421337)
chr8 (464-518)||(39866737-39866791)
chr8 (424-490)||(41442417-41442482)
chr8 (458-515)||(11183561-11183618)
chr8 (465-522)||(31705094-31705151)
chr8 (433-517)||(2458539-2458622)
chr8 (420-496)||(10722659-10722734)
chr8 (424-503)||(21130642-21130718)
[»] chr6 (27 HSPs)
chr6 (424-517)||(34939758-34939850)
chr6 (419-522)||(32665668-32665770)
chr6 (438-517)||(34939527-34939605)
chr6 (445-522)||(27909623-27909699)
chr6 (424-556)||(281812-281942)
chr6 (458-518)||(32577983-32578043)
chr6 (418-482)||(32917246-32917309)
chr6 (458-516)||(4420658-4420716)
chr6 (458-527)||(5564125-5564194)
chr6 (441-517)||(30523951-30524026)
chr6 (458-497)||(30784590-30784629)
chr6 (418-492)||(769177-769250)
chr6 (458-516)||(3168258-3168316)
chr6 (458-528)||(9732479-9732549)
chr6 (460-522)||(31583688-31583750)
chr6 (443-528)||(2117406-2117490)
chr6 (424-521)||(2460115-2460211)
chr6 (458-507)||(6536971-6537020)
chr6 (458-503)||(9667982-9668027)
chr6 (458-515)||(13908479-13908536)
chr6 (457-522)||(19275632-19275697)
chr6 (425-482)||(27595532-27595588)
chr6 (423-522)||(2205554-2205651)
chr6 (458-522)||(3155185-3155248)
chr6 (458-506)||(30863271-30863319)
chr6 (424-528)||(32975981-32976084)
chr6 (418-522)||(34403864-34403967)
[»] scaffold0020 (1 HSPs)
scaffold0020 (418-522)||(159931-160034)
[»] chr4 (34 HSPs)
chr4 (429-528)||(6978931-6979029)
chr4 (425-528)||(42866071-42866173)
chr4 (424-527)||(6987705-6987807)
chr4 (458-512)||(29467621-29467675)
chr4 (458-522)||(55547041-55547105)
chr4 (461-528)||(4798566-4798633)
chr4 (460-522)||(7694009-7694071)
chr4 (418-503)||(1137740-1137824)
chr4 (469-518)||(19429722-19429771)
chr4 (418-495)||(50799988-50800064)
chr4 (424-528)||(11264304-11264407)
chr4 (458-522)||(19304935-19304999)
chr4 (412-512)||(20936181-20936280)
chr4 (458-522)||(21157777-21157841)
chr4 (458-522)||(23819098-23819162)
chr4 (429-489)||(25571302-25571361)
chr4 (433-517)||(28614781-28614864)
chr4 (425-528)||(2996576-2996678)
chr4 (457-556)||(54325033-54325131)
chr4 (439-517)||(2874603-2874680)
chr4 (465-515)||(5131254-5131304)
chr4 (424-522)||(21043199-21043296)
chr4 (441-528)||(24370932-24371020)
chr4 (458-528)||(29263373-29263443)
chr4 (444-522)||(34398668-34398746)
chr4 (465-511)||(35405967-35406013)
chr4 (424-517)||(7063506-7063598)
chr4 (424-477)||(7730654-7730706)
chr4 (437-518)||(21952961-21953041)
chr4 (424-521)||(27123316-27123412)
chr4 (424-528)||(1965944-1966046)
chr4 (457-517)||(14011248-14011308)
chr4 (459-547)||(30207569-30207656)
chr4 (467-547)||(30338597-30338677)
[»] chr3 (32 HSPs)
chr3 (419-522)||(37273143-37273245)
chr3 (425-522)||(21574499-21574595)
chr3 (418-488)||(49772626-49772695)
chr3 (458-519)||(36200108-36200169)
chr3 (458-514)||(27290898-27290954)
chr3 (427-522)||(36646349-36646443)
chr3 (443-522)||(37825131-37825210)
chr3 (457-528)||(40122749-40122820)
chr3 (458-548)||(50952316-50952406)
chr3 (457-522)||(13709819-13709884)
chr3 (425-482)||(24603717-24603773)
chr3 (458-503)||(31010430-31010475)
chr3 (460-529)||(48048981-48049050)
chr3 (457-509)||(1360522-1360574)
chr3 (458-506)||(30750025-30750073)
chr3 (458-522)||(30923895-30923959)
chr3 (458-522)||(31403156-31403220)
chr3 (470-522)||(40608390-40608442)
chr3 (461-528)||(22214659-22214726)
chr3 (419-522)||(39311638-39311740)
chr3 (424-482)||(42747745-42747804)
chr3 (424-498)||(11039303-11039376)
chr3 (458-512)||(36101587-36101641)
chr3 (445-522)||(24887269-24887344)
chr3 (464-528)||(237400-237464)
chr3 (458-522)||(1217797-1217861)
chr3 (458-522)||(9279323-9279387)
chr3 (458-522)||(24785214-24785278)
chr3 (441-489)||(41724254-41724301)
chr3 (419-503)||(43115084-43115167)
chr3 (458-510)||(45432936-45432988)
chr3 (458-522)||(48528565-48528629)
[»] chr1 (33 HSPs)
chr1 (425-528)||(7262483-7262585)
chr1 (441-527)||(3924628-3924713)
chr1 (424-515)||(28935840-28935930)
chr1 (427-516)||(15579497-15579585)
chr1 (424-512)||(10439705-10439792)
chr1 (458-522)||(12477284-12477348)
chr1 (458-522)||(27140487-27140551)
chr1 (458-517)||(35925704-35925763)
chr1 (458-511)||(26184768-26184821)
chr1 (429-518)||(28689421-28689509)
chr1 (458-547)||(44422684-44422772)
chr1 (458-518)||(3597278-3597338)
chr1 (438-498)||(4549263-4549322)
chr1 (456-528)||(30257686-30257758)
chr1 (419-503)||(31517699-31517782)
chr1 (460-556)||(44031998-44032093)
chr1 (419-522)||(23373272-23373373)
chr1 (458-517)||(37593681-37593740)
chr1 (424-498)||(29007680-29007753)
chr1 (424-453)||(567631-567660)
chr1 (458-527)||(4699612-4699681)
chr1 (458-503)||(11639413-11639458)
chr1 (425-454)||(36495452-36495481)
chr1 (465-506)||(52286703-52286744)
chr1 (460-516)||(6231815-6231871)
chr1 (457-517)||(16981932-16981992)
chr1 (443-495)||(17628635-17628686)
chr1 (418-522)||(33723340-33723443)
chr1 (458-522)||(35017585-35017649)
chr1 (458-514)||(35080066-35080122)
chr1 (464-528)||(39347970-39348034)
chr1 (419-503)||(40485732-40485815)
chr1 (419-491)||(51730525-51730596)
[»] chr2 (34 HSPs)
chr2 (418-503)||(27237851-27237935)
chr2 (458-528)||(35485920-35485990)
chr2 (458-556)||(43141847-43141944)
chr2 (425-522)||(1741997-1742093)
chr2 (458-522)||(1939329-1939393)
chr2 (418-518)||(31228795-31228894)
chr2 (458-522)||(32821818-32821882)
chr2 (458-522)||(34652033-34652097)
chr2 (459-522)||(9530726-9530789)
chr2 (458-516)||(9478314-9478372)
chr2 (438-528)||(16785326-16785415)
chr2 (419-500)||(787363-787443)
chr2 (458-527)||(1810668-1810737)
chr2 (459-528)||(10563556-10563625)
chr2 (426-498)||(11063521-11063592)
chr2 (425-517)||(33192216-33192306)
chr2 (424-503)||(41041986-41042064)
chr2 (459-517)||(1160669-1160727)
chr2 (460-522)||(10198479-10198541)
chr2 (430-516)||(15120198-15120283)
chr2 (458-528)||(42381672-42381741)
chr2 (472-522)||(42817387-42817437)
chr2 (461-518)||(3973548-3973605)
chr2 (424-489)||(14316109-14316173)
chr2 (424-477)||(28803494-28803546)
chr2 (429-522)||(41817177-41817269)
chr2 (477-521)||(1741530-1741574)
chr2 (458-498)||(10285893-10285933)
chr2 (458-522)||(12215816-12215880)
chr2 (429-477)||(39962268-39962315)
chr2 (458-522)||(41144219-41144283)
chr2 (458-530)||(43065447-43065519)
chr2 (458-522)||(43985218-43985282)
chr2 (458-518)||(44458335-44458395)
[»] chr7 (21 HSPs)
chr7 (461-528)||(24363601-24363668)
chr7 (424-522)||(4966165-4966262)
chr7 (424-498)||(48157084-48157157)
chr7 (456-528)||(44151475-44151547)
chr7 (460-503)||(27496406-27496449)
chr7 (460-503)||(27503064-27503107)
chr7 (424-515)||(39334209-39334299)
chr7 (444-522)||(9423578-9423655)
chr7 (458-516)||(27626120-27626178)
chr7 (458-503)||(27517853-27517898)
chr7 (459-516)||(33894642-33894699)
chr7 (458-522)||(12234886-12234950)
chr7 (427-487)||(28520979-28521038)
chr7 (418-474)||(29574583-29574638)
chr7 (424-515)||(39345487-39345577)
chr7 (418-488)||(36537951-36538020)
chr7 (466-528)||(40439057-40439119)
chr7 (424-489)||(36598320-36598384)
chr7 (458-522)||(6552289-6552353)
chr7 (426-482)||(30535612-30535667)
chr7 (438-522)||(33645939-33646021)
[»] scaffold0003 (1 HSPs)
scaffold0003 (458-528)||(306329-306399)
[»] scaffold0147 (1 HSPs)
scaffold0147 (438-503)||(12682-12746)
[»] scaffold0311 (1 HSPs)
scaffold0311 (460-500)||(10616-10656)


Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 2468944 - 2468374
Alignment:
Q  17 acatcaaacactcaaatcaaacttatttccagagcttcccctttcatttttatctcatcaataaccaaattcttcaaataaatcttaacagaaaggaggt 116  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468944 acatcaaacactcaaatcaaacttatttcaacagcttcccccttcatttttatctcatcaataaccaaattcttcaaataaatcttaacagaaaggaggt 2468845  T
Q  117 tattgttttttaatatcacagtttcatttcttcattgttttgtatttggtttgaaaagaatgaaaatgagaaaaatatcacaataacaagtgatttatgt 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468844 tattgttttttaatatcacagtttgatttcttcattgttttgtatttggtttgaaaagaatgaaaatgagaaaaatatcacaataacaagtgatttatgt 2468745  T
Q  217 gcactcactgcaatgaaaaaagtcttgtctcccagttcagagaaaaatatcagcaaaaatgcctgtgatagagcataaaacaataagagaacaatattag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468744 gcactcactgcaatgaaaaaagtcttgtctcccagttcagagaaaaatatcagcaaaaatgcctgtgatagagcataaaacaataagagaacaatattag 2468645  T
Q  317 tctttgaatatcaagatagtcaaatcaaaatagtctttagttataatggcaaaagtatacaacagtttcctcactagggtctgtttgtattgacttaatc 416  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2468644 tctttgaatatcaatatagtcaaatcaaaatagtc-ttacttataatggcaaaagtatacaacagtttcctcattagggtctgtttgtattgacttaatc 2468546  T
Q  417 gacactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468545 gacactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 2468446  T
Q  517 taaaaagaactttacagcttttatgaaaacaaattgacttgttatataaaaaacacttatacatatccaatc 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2468445 taaaaagaactttacagcttttatgaaaacaaattgacttgttatataaataacacttatacatatccaatc 2468374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 11457210 - 11457148
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttt 481  Q
    ||||| |||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  11457210 acacttgtgagactgttttgaagagcttatggaaacaa-cttatgacatgtccataagctgttt 11457148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 2880506 - 2880614
Alignment:
Q  420 actagtgagactgttttggagaa-cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||||||| ||||||| |||| | ||||||||||||  |  |||| |||| |||||| |||||| |||||| ||||||||||||||| | ||||||||||    
T  2880506 actagtgaaactgtttgggaggagcttatggaaacagcta-atgatatgttcataaggtgttttcagcttatttccataaactcttctgaatagcttata 2880604  T
Q  519 aaaagaactt 528  Q
    |||| |||||    
T  2880605 aaaacaactt 2880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 556
Target Start/End: Complemental strand, 32172764 - 32172629
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| ||||||  |||| ||||| ||||||||||||| || |||||||||||||||||  |||| |||||| |||||| |  |||||| ||||||||||     
T  32172764 cacttgtgagatagtttgggagagcttatggaaacaactt-atgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatg 32172666  T
Q  519 aaaagaactttacagcttttatgaaaacaaattgactt 556  Q
    |||| | | ||| ||||| |||| |||||| |||||||    
T  32172665 aaaacagc-ttatagcttatatgtaaacaacttgactt 32172629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 17258880 - 17258944
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||| ||||||||||||| |||||| || ||||| ||||||||||||| |||| ||||    
T  17258880 ttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaa 17258944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 5284437 - 5284515
Alignment:
Q  450 aaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||| ||||||||||||||||||||| |||| |||||| || ||| | ||||||| |||||| ||| |||| |||||    
T  5284437 aaacaactttatgacatgtccataagcttttttcagcttattttcattagctcttcatgatagcctatgaaaacaactt 5284515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 528
Target Start/End: Complemental strand, 17368768 - 17368679
Alignment:
Q  438 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||| |||||| || ||||||||| |||| || ||||| |||||| |||||||| |||| || |||||||||| |||| |||||    
T  17368768 gagaacttatgaaaacaactt-atgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaacaactt 17368679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 528
Target Start/End: Original strand, 40205071 - 40205141
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||| |||||||||||| ||||||| |||||| ||| |||| |||| ||||||||||||| |||| |||||    
T  40205071 ttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaactt 40205141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 503
Target Start/End: Original strand, 11700337 - 11700420
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    |||| |||||||| ||  |||||  |||||||||||| || ||||||||||||||||||||||| || ||| || ||||||||||    
T  11700337 cacttgtgagactattgaggagagtttatggaaacaactt-atgacatgtccataagctgttttcagattattttcataaactct 11700420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 12521601 - 12521541
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||||| |||| ||||||||||||| |||||| |||||||| |||||||  ||||||||||    
T  12521601 ttatgatatgttcataagctgttttcagcttatttccataagctcttcaaaatagcttata 12521541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 32408589 - 32408653
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||| |||| || |||  ||||| |||||||| |||||||||||||||||| ||||    
T  32408589 ttatgacatgtccgtaagttggtttctgcttatttccataagctcttcaggatagcttatgaaaa 32408653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 36774704 - 36774768
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||  ||| || ||| |||||| |||||||| |||| ||||||||||||||||||    
T  36774704 ttatgacatgtcctaaagatggtttcagcttatttccataagctctccaggatagcttataaaaa 36774768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 985686 - 985627
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||||||||||||| |||| ||||| |||||| |||||||  ||||||| ||||||||||    
T  985686 ttatgacatgtccacaagcggttttcagcttatttccatagtctcttcatgatagcttat 985627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 1899227 - 1899157
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||| |||||| |||||| |||||| ||||||||| ||| ||| ||| ||||||| || |||||    
T  1899227 ttatgacatgtgcataagttgttttcagcttatttccataaattctccagtataacttataagaataactt 1899157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 522
Target Start/End: Complemental strand, 7674754 - 7674657
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| || | ||||||||||||||||| || |||||||||  ||||| |||||| |||||| || || ||| ||| || |||||||||| ||||    
T  7674754 gtgagactgcttggaagaacttatggaaacaactt-atgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaa 7674657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 556
Target Start/End: Original strand, 10272428 - 10272525
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 556  Q
    ||||||||||||  |||| |||||| |||||| || |||||||||| || ||| |||||| |||| ||| ||| ||||| || |||||||| |||||||    
T  10272428 ttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaac-ttatagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 14295579 - 14295521
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    |||||| ||||| |||||||||||| |||||||||| | || |||| ||||||||||||    
T  14295579 ttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagctta 14295521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 15074750 - 15074816
Alignment:
Q  462 gacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||||||||||| |||||| |||||||| || | ||| ||| ||||| |||| |||||    
T  15074750 gacatgtccataagctgttttcagcttatttccataagctttccagtataacttatgaaaacaactt 15074816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Original strand, 18543194 - 18543263
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||||| || |||||| |||||| || ||||| |||| ||||||||||||| |||| |||||    
T  18543194 ttatgacatgtccatgagttgttttcagctta-tttcataagctctccaggatagcttatgaaaacaactt 18543263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 28982083 - 28982013
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||||  |||||||||||| ||  || |||||||| |||| |||| ||||||||||||| |||||    
T  28982083 ttatgacatgtaaataagctgttttcagtctaattccataagctctccagggtagcttataaaaacaactt 28982013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 517
Target Start/End: Complemental strand, 30217192 - 30217096
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||| |||||||||||| ||||| |||||||||  | | ||||| |||||||||||| ||||||  | ||| |||||||| |||| |||||||||||||    
T  30217192 cacttgtgagactgtttaggagagcttatggaatta-tcttatg-catgtccataagttgttttaggtttatttccataagctctccaggatagcttat 30217096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 37611179 - 37611276
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||| |||||  |||| |||||| |||||| ||  |||||||| ||||||||||||| || ||| |||||||| |||| || |||||||||| ||||    
T  37611179 gtgagattgtttgagagagcttatgaaaacaacttg-tgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 37787909 - 37788006
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||| |||||  |||| |||||| |||||| ||  |||||||| ||||||||||||| || ||| |||||||| |||| || |||||||||| ||||    
T  37787909 gtgagattgtttgagagagcttatgaaaacaacttg-tgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 6109595 - 6109519
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttcca 495  Q
    ||||| |||||| | ||||||||| |||||||||| || || |||| ||||||||||| |||||| |||||| |||||    
T  6109595 acacttgtgagaatattttggagagcttatggaaaaaaatt-atgatatgtccataagttgttttcagcttatttcca 6109519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 517
Target Start/End: Original strand, 36542266 - 36542338
Alignment:
Q  444 ttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||| | |||||||||||||| |||||||||| | |||| ||||| || ||||  ||||||||||||    
T  36542266 ttatggaaaca-tcttatgacatgtccagaagctgtttttaacttatttccacaagctctctaggatagcttat 36542338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 38047847 - 38047895
Alignment:
Q  428 gactgttttggagaacttatggaaacaattttatgacatgtccataagct 477  Q
    |||||||| ||||| |||||||||||||  ||||||||||||||||||||    
T  38047847 gactgtttgggagagcttatggaaacaa-cttatgacatgtccataagct 38047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 10798421 - 10798473
Alignment:
Q  470 cataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||| |||||||| || ||| |||||| | |||||||||||||||||||||||    
T  10798421 cataggctgttttcagattatttccatcagctcttcaggatagcttataaaaa 10798473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 12242707 - 12242771
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||  ||| || |||||| ||||||||||||||| |||| || |||||||||| ||||    
T  12242707 ttatgacatgaacattagttgttttcagcttacttccataagctctccaagatagcttatgaaaa 12242771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 517
Target Start/End: Original strand, 28413288 - 28413340
Alignment:
Q  465 atgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||| ||||||||||||| |||||| ||||||||||||| || |||| |||||    
T  28413288 atgttcataagctgttttcagcttatttccataaactctccaagataacttat 28413340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 548
Target Start/End: Complemental strand, 29588942 - 29588863
Alignment:
Q  468 tccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaa 548  Q
    |||||| ||| |||| |||||| ||||||||||||||||  ||||||||  ||||  |||||| ||||| |||||||||||    
T  29588942 tccataggctattttcagcttatttccataaactcttcaacatagcttacgaaaa-cactttatagcttatatgaaaacaa 29588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 37794695 - 37794735
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    ||||||||||| |||||||||||||||||||| ||| ||||    
T  37794695 ttatgacatgttcataagctgttttgagcttatttcgataa 37794735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 424 - 524
Target Start/End: Complemental strand, 14949972 - 14949873
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    |||||||||||| ||||| |||||| ||| || || ||||||||||||||||||||||| |||||| ||| |||| ||||| |||||||||||| |||||    
T  14949972 gtgagactgtttaggagagcttatgaaaataactt-atgacatgtccataagctgttttcagcttatttctataatctctttaggatagcttatgaaaag 14949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 425 - 556
Target Start/End: Complemental strand, 5088957 - 5088824
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 524  Q
    ||||||||| ||||||| |||||||||||| ||| || |||||||||||||||||||| | |||| ||| |||| |||| |||||| |||| | |||| |    
T  5088957 tgagactgtcttggagagcttatggaaacagttt-ataacatgtccataagctgttttcaacttatttcaataagctctccaggatcgcttgtgaaaaca 5088859  T
Q  525 actt---tacagcttttatgaaaacaaattgactt 556  Q
    ||||   || ||||| |||||||| || |||||||    
T  5088858 acttatatatagcttatatgaaaataatttgactt 5088824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 522
Target Start/End: Original strand, 11813063 - 11813166
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| |||| ||||| | ||||||||||||||||||| |||||||||| |||||| |||||||| |||||| |||  ||| ||||| | ||||||||||    
T  11813063 acactcgtgaaactgtatgggagaacttatggaaacaa-tttatgacatatccataggctgttttcagcttatttctgtaagctcttgaagatagcttat 11813161  T
Q  518 aaaaa 522  Q
     ||||    
T  11813162 gaaaa 11813166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 20672823 - 20672759
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||| ||||||||||||| |||||| || ||||| |||| ||||||||||||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaa 20672759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 522
Target Start/End: Original strand, 30191108 - 30191202
Alignment:
Q  427 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| ||||| ||||||||||||| || ||||||||| || ||  |||||| |||||| ||||||||||  ||||||||||||||| ||||    
T  30191108 agactgtttgggagagcttatggaaacaactt-atgacatgttcaaaacttgttttcagcttatttccataaacatttcaggatagcttatcaaaa 30191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 34849209 - 34849136
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    ||||||||||| |||||||| ||| |||||| |||||||||||| ||||||| ||||| |||| | ||||||||    
T  34849209 tgagactgtttgggagaactaatgaaaacaactttatgacatgttcataagccgttttcagctgatttccataa 34849136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 25869263 - 25869327
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||| || |||||| ||| ||||    
T  25869263 ttatgacatgtccataagttgttttcagcttatttccataaactctccatgatagcctatgaaaa 25869327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 528
Target Start/End: Original strand, 39551173 - 39551276
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    |||| ||||||| |||||| |||||||||||| || |||||||||||| |||||||||| | |||| ||  |||| |||| ||||| ||||||| ||||     
T  39551173 gtgaaactgtttgggagaatttatggaaacaactt-atgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaac 39551271  T
Q  524 aactt 528  Q
    |||||    
T  39551272 aactt 39551276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 3254298 - 3254235
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 521  Q
    ||||||||||| ||||||||||||| |||||| ||| ||| |||||  ||||||||||||||||    
T  3254298 ttatgacatgttcataagctgttttcagcttatttctatacactctataggatagcttataaaa 3254235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 42370359 - 42370417
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||| | || ||||||| |||||| |||||||||||||||| ||||||||||    
T  42370359 tatgacatgtctacaaactgttttcagcttatttccataaactcttcatgatagcttat 42370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 518
Target Start/End: Original strand, 10062118 - 10062198
Alignment:
Q  437 ggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    ||||| ||||||| |||| ||||||||||| || |||||||||||| |||||| || |||||||||   |||||||||||||    
T  10062118 ggagagcttatggcaaca-ttttatgacatttctataagctgttttcagcttatttgcataaactcacaaggatagcttata 10062198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 29169094 - 29169158
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||| |||| |||||||||| ||||  ||||| ||||||||||||||||||||| |||| |||||    
T  29169094 ttataacatatccataagctattttcggcttatttccataaactcttcaggataacttacaaaaa 29169158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 522
Target Start/End: Original strand, 30277246 - 30277306
Alignment:
Q  462 gacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||| ||||||| |||||| |||||| |||||||||||||  |||||||||||| ||||    
T  30277246 gacatggccataagttgttttcagcttatttccataaactctctaggatagcttatgaaaa 30277306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 33553313 - 33553249
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||| |||||||||   |||||| |||||||| ||||||| |||||||||| ||||    
T  33553313 ttatgacatgtccctaagctgttcccagcttatttccataagctcttcaagatagcttatgaaaa 33553249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 511
Target Start/End: Complemental strand, 6950428 - 6950342
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggata 511  Q
    |||||| ||||| ||||| |||||| ||||||  | |||||||||| ||||| |||||| |||||| |||||||| ||||| ||||||    
T  6950428 gtgagattgtttgggagagcttatgtaaacaacct-atgacatgtcgataagttgttttcagcttatttccataagctctttaggata 6950342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 11569416 - 11569518
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| ||||||||||||  |||| ||||||||||||  || ||||||||| |||||| |||||| |||||| || || || |||| || ||||||||||     
T  11569416 cacttgtgagactgtttaagagagcttatggaaacagctt-atgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatg 11569514  T
Q  519 aaaa 522  Q
    ||||    
T  11569515 aaaa 11569518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 11795165 - 11795106
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||||||||| ||||||| |||||| |||||||| |||| ||  |||||||||    
T  11795165 ttatgacatgtccataacctgttttcagcttatttccataagctctccataatagcttat 11795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 522
Target Start/End: Original strand, 28769337 - 28769400
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||| ||||||||||| |||||| |||||| ||||||||||||| ||  ||||||||| ||||    
T  28769337 tatgatatgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaa 28769400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 522
Target Start/End: Original strand, 42215269 - 42215367
Alignment:
Q  423 agtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||| ||||||| |||||||| ||| |||||  || ||||| ||| ||||||||||||| |||||| || ||||| |||| ||||||||| ||| ||||    
T  42215269 agtgacactgtttgggagaactaatgaaaacagctt-atgacttgttcataagctgttttcagcttatttacataagctctccaggatagcatatgaaaa 42215367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 43504862 - 43504760
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| ||| |||||||| |||||||| ||| |||||| || | ||| |||  |||||||||||| |||||| ||||||||  ||| || |||||||||||    
T  43504862 cacttgtgtgactgtttcggagaactgatgaaaacaactt-acgacttgtttataagctgttttcagcttatttccataagttctccaagatagcttata 43504764  T
Q  519 aaaa 522  Q
    ||||    
T  43504763 aaaa 43504760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 12361265 - 12361168
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 556  Q
    ||||||||||||||||||||||||| | |||| |||||| | |||| | | ||| ||||| |||| | | ||| ||||| ||||||||||| |||||||    
T  12361265 ttatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagc-ttatagcttatatgaaaacaatttgactt 12361168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 509
Target Start/End: Original strand, 29589949 - 29590013
Alignment:
Q  443 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcagga 509  Q
    |||||| |||||||||| | || ||||||||||||||||| |||||| ||||||||||||| |||||    
T  29589949 cttatgcaaacaatttt-tcacctgtccataagctgttttcagctta-ttccataaactctccagga 29590013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 29890844 - 29890901
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 482  Q
    |||||||||||| | |||  |||||||||||||||| ||||| ||||||||||||||||    
T  29890844 gtgagactgtttggtagagtttatggaaacaatttt-tgacaagtccataagctgtttt 29890901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 38421337 - 38421267
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||||||||||| |||||| ||||||||| || ||  |||||| |||||||| | |||| |||||    
T  38421337 ttatgacatgtccataagttgttttcagcttacttacacaagatcttcaagatagcttttgaaaacaactt 38421267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 518
Target Start/End: Original strand, 39866737 - 39866791
Alignment:
Q  464 catgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    ||||||||||||||||||| || ||| || ||||| ||||||| |||||||||||    
T  39866737 catgtccataagctgttttcagtttattttcataagctcttcaagatagcttata 39866791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 41442417 - 41442482
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttac 490  Q
    ||||||||||||   |||||||||| ||||||||| ||||||||| |||| |||||||| |||||||    
T  41442417 gtgagactgtttgacagaacttatgaaaacaattt-atgacatgttcatatgctgttttcagcttac 41442482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 11183618 - 11183561
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 515  Q
    |||||| ||||| |||||||||||| |||||| |||||||| |||| |||| ||||||    
T  11183618 ttatgatatgtctataagctgttttcagcttatttccataagctctccagggtagctt 11183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 31705151 - 31705094
Alignment:
Q  465 atgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||| ||||||||||||| |||||| |||||||||||||  |||| ||||||| ||||    
T  31705151 atgtgcataagctgttttcagcttatttccataaactctcaaggacagcttatgaaaa 31705094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 517
Target Start/End: Original strand, 2458539 - 2458622
Alignment:
Q  433 ttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||||||||||||||| | |||  || ||| ||||| ||||||||||||| || ||| |||||||| ||||  ||||||||||||    
T  2458539 ttttggagaacttatgaagacagctt-atggcatgttcataagctgttttcagtttatttccataagctctctaggatagcttat 2458622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 10722734 - 10722659
Alignment:
Q  420 actagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccat 496  Q
    |||||||||| ||||| |||||| |||||||||| |  ||||||||| |||||| | |||||| |||||| ||||||    
T  10722734 actagtgagattgtttgggagaatttatggaaac-agcttatgacatctccataggttgtttttagcttatttccat 10722659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 503
Target Start/End: Complemental strand, 21130718 - 21130642
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||  |||| |||||||||| |  ||| ||||||||||||  ||||||||||||||| |||||||| ||||    
T  21130718 gtgagactgtttgagagagcttatggaaatagcttt-tgacatgtccat--gctgttttgagcttatttccataagctct 21130642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 34939850 - 34939758
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||| ||||||||||||| |||| |||||||  || |||||||||||||||  |||||| |||||| ||||||||||||| |||||||||||||    
T  34939850 gtgaaactgttttggagagcttacggaaacagctt-atgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 32665770 - 32665668
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||||||||| ||| ||| |||| |||||||||||| |||||||||||| | |||  ||||||| ||| || ||||| |||||||| |||||||||||||    
T  32665770 cactagtgagtctgctttagagatcttatggaaaca-ttttatgacatgcctatagcctgttttcagcatatttccacaaactctttaggatagcttata 32665672  T
Q  519 aaaa 522  Q
    ||||    
T  32665671 aaaa 32665668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 34939605 - 34939527
Alignment:
Q  438 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||| ||||||||||||| || |||||| |||| |||| |||||| |||||| |||||||| ||||||||||||||||||    
T  34939605 gagagcttatggaaacaactt-atgacacgtccgtaagttgttttcagcttatttccataacctcttcaggatagcttat 34939527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 522
Target Start/End: Original strand, 27909623 - 27909699
Alignment:
Q  445 tatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| | |||||||||||||||| |||||| |||||| |||||||| |||| ||| | ||||||||||||    
T  27909623 tatggaaacaatat-atgacatgtccataagttgttttcagcttatttccataagctctccagtaaagcttataaaaa 27909699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 556
Target Start/End: Original strand, 281812 - 281942
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    |||||||||||| ||||| || |||||| ||| || |||||||||| ||||| |||||| |||||| |||||| | ||||  |||||||||||| || |     
T  281812 gtgagactgtttgggagagctaatggaagcaactt-atgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacac 281910  T
Q  524 aactttacagcttttatgaaaacaaattgactt 556  Q
    | | ||| ||||| ||||||||||| |||||||    
T  281911 agc-ttatagcttatatgaaaacaagttgactt 281942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 32577983 - 32578043
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    ||||||||||||| | ||||||||| |||||| |||||||  |||||||||||||||||||    
T  32577983 ttatgacatgtccttgagctgttttcagcttatttccatatgctcttcaggatagcttata 32578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 32917309 - 32917246
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 482  Q
    ||||| |||||||||||| ||||| |||||||||||||  |||||||||||||||||||| ||||    
T  32917309 acacttgtgagactgtttgggagagcttatggaaacaa-cttatgacatgtccataagctttttt 32917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 4420716 - 4420658
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    ||||||||||| ||||||||||||| |||||| |||||||| |||| || |||||||||    
T  4420716 ttatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 527
Target Start/End: Original strand, 5564125 - 5564194
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 527  Q
    |||||||||||||  |||||||||| |||||| || ||||||||||||| || ||||||| |||| ||||    
T  5564125 ttatgacatgtccgaaagctgttttcagcttatttgcataaactcttcaagacagcttatgaaaacaact 5564194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 517
Target Start/End: Complemental strand, 30524026 - 30523951
Alignment:
Q  441 aacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    |||||||| |||||| || ||||||||||||| || || ||| |||||| |||||||| ||||| ||||||||||||    
T  30524026 aacttatgaaaacaaatt-atgacatgtccattagttgcttttagcttatttccataagctctttaggatagcttat 30523951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 497
Target Start/End: Complemental strand, 30784629 - 30784590
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccata 497  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  30784629 ttatgaaatgtccataagctgttttgagcttatttccata 30784590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 492
Target Start/End: Complemental strand, 769250 - 769177
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttactt 492  Q
    ||||| |||||||||||| |  ||||||||| ||||| | ||||||||||| ||||||||||||| | |||||||    
T  769250 acacttgtgagactgtttggatgaacttatgaaaaca-tcttatgacatgttcataagctgttttcaacttactt 769177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 3168258 - 3168316
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    |||||||||||||||  |||||||| |||||| |||| ||| |||| ||||||||||||    
T  3168258 ttatgacatgtccatcggctgttttcagcttatttccttaagctctccaggatagctta 3168316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 9732549 - 9732479
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||| |||||||||||| ||||||| |||||||||| |||||||||  |||||| ||| | |||| |||||    
T  9732549 ttataacatgtccataaactgttttcagcttacttctataaactctcaaggataacttgtgaaaacaactt 9732479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 31583750 - 31583688
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||| |||||| | |||| |||||||| || ||| ||||||||||| ||||    
T  31583750 atgacatgtccataagttgttttcaacttatttccataagcttttcgggatagcttatgaaaa 31583688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 2117490 - 2117406
Alignment:
Q  443 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||| |||||||||| ||| |||||| |||||||||||| |||||| ||| |||| ||||  |||||| ||||| |||| |||||    
T  2117490 cttatagaaacaattt-atggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaactt 2117406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 2460115 - 2460211
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 521  Q
    ||||||||||||  |||| |||||||||||||  ||||||||||||  |||| |||||| | |||| |||||||| |||| ||  |||||||| ||||    
T  2460115 gtgagactgtttgagagagcttatggaaacaa-cttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 2460211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Complemental strand, 6537020 - 6536971
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcag 507  Q
    ||||||||||| |||||| |||||| |||||| |||||||| ||||||||    
T  6537020 ttatgacatgttcataagttgttttcagcttatttccataagctcttcag 6536971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 9667982 - 9668027
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||||||||||||||| | |||| |||||||| ||||    
T  9667982 ttatgacatgtccataagctgttttcaacttatttccataagctct 9668027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 515
Target Start/End: Complemental strand, 13908536 - 13908479
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 515  Q
    ||||||||||| | ||||||||||| |||||| || ||||| ||||||| ||||||||    
T  13908536 ttatgacatgttcgtaagctgttttcagcttattttcataagctcttcatgatagctt 13908479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 19275632 - 19275697
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||| |||||| |||  | ||| |||||||| ||||||| |||||||||| ||||    
T  19275632 tttatgacatgtccacaagctgatttcggtttatttccataagctcttcatgatagcttatgaaaa 19275697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 27595532 - 27595588
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 482  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||| |||||||| ||||    
T  27595532 tgagactgtttgggagaatttatggaaacaa-cttatgacatgttcataagctatttt 27595588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 522
Target Start/End: Original strand, 2205554 - 2205651
Alignment:
Q  423 agtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||| |||||| |||| |||||||||||||  ||| |||||||  |||| || | || |||||| |||||||| |||| || |||||||||| ||||    
T  2205554 agtgagattgttttagagagcttatggaaacaa--ttaggacatgtttataaactatattcagcttatttccataagctctccaagatagcttatgaaaa 2205651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 3155248 - 3155185
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| |||||||||||| |||||| |||||| | |||| ||||||| ||||| ||||    
T  3155248 ttatgacatgtctataagctgttttcagcttatttccat-agctctccaggatatcttatgaaaa 3155185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 30863319 - 30863271
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttca 506  Q
    ||||||||||| |||||| |||||| |||||||||| |||| |||||||    
T  30863319 ttatgacatgtacataagttgttttcagcttacttctataagctcttca 30863271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 528
Target Start/End: Complemental strand, 32976084 - 32975981
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    |||||||||||| | ||| ||||| ||||||  || ||||||| ||||||||||||||| ||| | |||| |||| |  | ||||||||||||| ||||     
T  32976084 gtgagactgtttggaagagcttatagaaacagctt-atgacatttccataagctgttttcagcgtgcttctataatcattccaggatagcttatgaaaac 32975986  T
Q  524 aactt 528  Q
    |||||    
T  32975985 aactt 32975981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 522
Target Start/End: Complemental strand, 34403967 - 34403864
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| || ||||||||| |||||| ||| | |||||| || ||||||||| |||||| |||||| | |||| |||||||| ||||| || | |||||||    
T  34403967 acacttgttagactgtttaggagaagttaagaaaacaactt-atgacatgttcataaggtgttttcaccttatttccataagctctttagtacagcttat 34403869  T
Q  518 aaaaa 522  Q
     ||||    
T  34403868 gaaaa 34403864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 522
Target Start/End: Original strand, 159931 - 160034
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| |||| ||| |||||||||||| ||||||||| ||| |||||||||| |||||| ||||| |||||| ||||| || ||||| ||||||||||||    
T  159931 acacttgtgaaactattttggagaactaatggaaacagttt-atgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttat 160029  T
Q  518 aaaaa 522  Q
     ||||    
T  160030 gaaaa 160034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 528
Target Start/End: Original strand, 6978931 - 6979029
Alignment:
Q  429 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||| | ||||||||| |||| || || |||||||||| |||||||||||| |||||| || ||||||||||| ||||| ||||||||||| |||||    
T  6978931 actgtttggcagaacttattgaaataactt-atgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaactt 6979029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 425 - 528
Target Start/End: Complemental strand, 42866173 - 42866071
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 524  Q
    ||||||| ||| |||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||||||||||| ||||  |||||||||||| |||| |    
T  42866173 tgagactctttgggagaacttatgtaaaca-ttctatgatatgtccataagatgcttttagcttacttccataagctctcaaggatagcttatgaaaaca 42866075  T
Q  525 actt 528  Q
    ||||    
T  42866074 actt 42866071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 527
Target Start/End: Original strand, 6987705 - 6987807
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    |||||||||||| ||||| |||||||| |||| || ||||||||||||||| || |||| | |||| |||||||| |||| ||||||||| || |||||     
T  6987705 gtgagactgtttgggagagcttatggatacaactt-atgacatgtccataaactattttcaacttatttccataagctctccaggatagcgtaaaaaaat 6987803  T
Q  524 aact 527  Q
    ||||    
T  6987804 aact 6987807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 29467621 - 29467675
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatag 512  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||  |||||||    
T  29467621 ttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 55547041 - 55547105
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| ||||| |||||| |||||| ||||||||||| ||||| ||||||||| ||||    
T  55547041 ttatgacatgtctataagttgtttttagcttatttccataaacttttcagcatagcttatgaaaa 55547105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 4798566 - 4798633
Alignment:
Q  461 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||| |||||||||||||||||||| || ||||| |||| || |||||||||| |||| |||||    
T  4798566 tgacatgtacataagctgttttgagcttatttgcataagctctccaagatagcttatgaaaacaactt 4798633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 7694009 - 7694071
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| |||||| |||||| |||||| ||||||||||||| ||||||| ||||| ||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaa 7694071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 503
Target Start/End: Complemental strand, 1137824 - 1137740
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||| |||| ||||||| |||||||||||| ||||| | ||||||||||| |||||| |||||| || ||| |||||||| ||||    
T  1137824 acacttgtgacactgtttaggagaacttatgaaaaca-tcttatgacatgttcataagttgttttcagtttatttccataagctct 1137740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 518
Target Start/End: Complemental strand, 19429771 - 19429722
Alignment:
Q  469 ccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||||||||||||| |||||| |||||||| |||| ||||||||||||||    
T  19429771 ccataagctgttttcagcttatttccataagctctccaggatagcttata 19429722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 50799988 - 50800064
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttcca 495  Q
    ||||| |||||| ||||| |||||||| ||| |||||| || |||||||||| |||||||||||| |||||| |||||    
T  50799988 acacttgtgagattgtttgggagaactaatgtaaacaactt-atgacatgtctataagctgttttcagcttatttcca 50800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 528
Target Start/End: Complemental strand, 11264407 - 11264304
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    |||||||||||| ||||| | ||| ||| ||| || ||||||||||||||| ||||||| | |||| |||||||| ||||  ||||| |||||| ||||     
T  11264407 gtgagactgtttgggagagcatatagaatcaactt-atgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaac 11264309  T
Q  524 aactt 528  Q
    |||||    
T  11264308 aactt 11264304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 19304999 - 19304935
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| |||||| |||||  |||||| |||||| ||  ||||||||||||||    
T  19304999 ttatgacatgtccataagttgttttcagcttgtttccattaactctccaaaatagcttataaaaa 19304935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 512
Target Start/End: Original strand, 20936181 - 20936280
Alignment:
Q  412 taatcgacactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggata 511  Q
    ||||| ||||| |||| ||||||| | | |||||||| |||||| || |||| |||| ||||||||||||| | |||| |||||||| |||| |||||||    
T  20936181 taatctacacttgtgacactgtttcgtaaaacttatgaaaacaactt-atgatatgttcataagctgttttcaccttatttccataatctctccaggata 20936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 21157841 - 21157777
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| | || |||||||||| |||||| |||||||| |||||||||||||| ||| ||||    
T  21157841 ttatgacatttacaaaagctgtttttagcttatttccataagctcttcaggatagcatatgaaaa 21157777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 23819162 - 23819098
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| |||||| | |||| ||| |||| ||||||| |||||||||| ||||    
T  23819162 ttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaa 23819098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 25571361 - 25571302
Alignment:
Q  429 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctta 489  Q
    ||||||| ||||||||||||||||| | ||||||| |||| ||||||||||||| ||||||    
T  25571361 actgtttaggagaacttatggaaac-agtttatgatatgttcataagctgttttcagctta 25571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 517
Target Start/End: Original strand, 28614781 - 28614864
Alignment:
Q  433 ttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| ||| |||||||||||||||| ||||||| |||||||||| |||| |||||| || |||||  |||  ||||||||||||    
T  28614781 ttttgaagagcttatggaaacaattt-atgacatatccataagctcttttcagcttattttcataagttctctaggatagcttat 28614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 528
Target Start/End: Complemental strand, 2996678 - 2996576
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 524  Q
    |||||||||||  |||| |||||| |||||| || |||||||||||||||||| |||| | |||| || ||||  |||| || |||||||||| |||| |    
T  2996678 tgagactgtttgagagagcttatgaaaacaactt-atgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaaca 2996580  T
Q  525 actt 528  Q
    ||||    
T  2996579 actt 2996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 556
Target Start/End: Original strand, 54325033 - 54325131
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 556  Q
    ||||||| |||||||||||||||||| || |||  |||||||||||| || |||||||| | |||| | | ||| ||||| ||||||||||  |||||||    
T  54325033 tttatgatatgtccataagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagc-ttatagcttatatgaaaacagtttgactt 54325131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 517
Target Start/End: Original strand, 2874603 - 2874680
Alignment:
Q  439 agaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||||||||| || ||||||||||||||| || ||||  ||||| |||||||| | || | |||||||||||    
T  2874603 agaacttatggaaacaactt-atgacatgtccataatctattttccgcttatttccataagcactcctggatagcttat 2874680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 515
Target Start/End: Original strand, 5131254 - 5131304
Alignment:
Q  465 atgtccataagctgttttgagcttacttccataaactcttcaggatagctt 515  Q
    ||||||||||| |||||| |||||| |||||||| |||| |||||||||||    
T  5131254 atgtccataagttgttttcagcttatttccataagctctccaggatagctt 5131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 21043199 - 21043296
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| |||||  |||||||||||  || |||||| || ||||||||||||| ||  || || ||||  |||||||||||||||||| ||||    
T  21043199 gtgagactgtttgggagaggttatggaaacagctt-atgacacgttcataagctgttttcagtgtattttcatatgctcttcaggatagcttatgaaaa 21043296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 528
Target Start/End: Original strand, 24370932 - 24371020
Alignment:
Q  441 aacttatggaaacaattttatgacatgtc--cataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||||| || |||||||||   ||||||| ||||| |||||| ||| ||||||| || |||||||||||| |||| |||||    
T  24370932 aacttatggaaacaactt-atgacatgtatacataagccgttttcagcttatttctataaactatttaggatagcttatgaaaacaactt 24371020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 29263443 - 29263373
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||| |||| |||||| |||||| |||||| ||||| || |||| ||||||||||||| |||| |||||    
T  29263443 ttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaactt 29263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 522
Target Start/End: Original strand, 34398668 - 34398746
Alignment:
Q  444 ttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||| ||  ||||||||||| ||||||| ||||||  |||||||||||||| |||| || ||| |||||| ||||    
T  34398668 ttatggaagcagctttatgacatgcccataagttgttttcggcttacttccataagctctccatgatggcttatgaaaa 34398746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 35406013 - 35405967
Alignment:
Q  465 atgtccataagctgttttgagcttacttccataaactcttcaggata 511  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||||    
T  35406013 atgttcataagctgttttcagcttacttccataagctctccaggata 35405967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 7063598 - 7063506
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||||  |||| ||||||| ||||| |||||||||| |||||||||| |||| |||||  |||  ||| ||  ||||||||||||||    
T  7063598 gtgagactgtttaagagatcttatgggaacaa-tttatgacatttccataagctattttcagcttttttctttaagcttgtcaggatagcttat 7063506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 7730706 - 7730654
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagct 477  Q
    |||||||| ||||||||| |||| |||||||| || ||||||||||||||||||    
T  7730706 gtgagactattttggagagcttaaggaaacaactt-atgacatgtccataagct 7730654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 21953041 - 21952961
Alignment:
Q  437 ggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    ||||| |||||||||| || || ||||||||||||||| ||||||| || ||| |||| ||| ||||  |||||||||||||    
T  21953041 ggagagcttatggaaagaactt-atgacatgtccataacctgtttttagtttatttccttaagctctataggatagcttata 21952961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 27123316 - 27123412
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 521  Q
    ||||||||||||  |||| |||||||||||||  ||||||||||||  |||| |||||| | |||| |||||||| |||| ||  |||||||| ||||    
T  27123316 gtgagactgtttgagagagcttatggaaacaa-cttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 528
Target Start/End: Complemental strand, 1966046 - 1965944
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 523  Q
    ||||||||||||| | || |||||| |||||| || ||||||||| ||||||||||||| | |||| ||||| ||  | |  |||||||||||||||||     
T  1966046 gtgagactgttttag-gagcttatgaaaacaactt-atgacatgttcataagctgtttttaacttatttccagaagatttctaggatagcttataaaaat 1965949  T
Q  524 aactt 528  Q
    |||||    
T  1965948 aactt 1965944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 14011308 - 14011248
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| |||||||  ||||||||||| |||||| |||||||| |||| || ||||||||||    
T  14011308 tttatcacatgtctttaagctgttttcagcttatttccataagctctccaagatagcttat 14011248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 30207569 - 30207656
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 547  Q
    |||||||||||  ||||||||||| |||||| |||||||| ||||  | | |||||||| |||| ||| ||| ||||| ||||||||||    
T  30207569 tatgacatgtctgtaagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaac-ttatagcttatatgaaaaca 30207656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 547
Target Start/End: Original strand, 30338597 - 30338677
Alignment:
Q  467 gtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 547  Q
    ||||||||||||||||  ||||| || |||||||||| || || ||||||| ||||  | |||| ||||| ||||||||||    
T  30338597 gtccataagctgttttatgcttattttcataaactctccaagagagcttatgaaaaacagtttatagcttatatgaaaaca 30338677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 37273245 - 37273143
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| |||||||||||| ||||| ||||||||||||| || |||||||||||||||| |||||| | |||| ||||||||  ||| || ||||||||||     
T  37273245 cactggtgagactgtttgggagagcttatggaaacaactt-atgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatg 37273147  T
Q  519 aaaa 522  Q
    ||||    
T  37273146 aaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 522
Target Start/End: Complemental strand, 21574595 - 21574499
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||| ||||| |||||| |||||| || ||||||||| ||||||||| ||| |||||| |||||||| |||| || | |||||||||||||    
T  21574595 tgagactgtttgggagagcttatgaaaacaactt-atgacatgttcataagctgcttttagcttatttccataagctctccatgttagcttataaaaa 21574499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 49772626 - 49772695
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctt 488  Q
    |||||||||||||||||| ||||| |||||||||||||  |||||| ||||||||||||| |||| |||||    
T  49772626 acactagtgagactgtttaggagagcttatggaaacaa-cttatgagatgtccataagctttttttagctt 49772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 519
Target Start/End: Complemental strand, 36200169 - 36200108
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataa 519  Q
    |||||||||||||||||| |||||| |||||| |||||| | |||| |||||||||||||||    
T  36200169 ttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttataa 36200108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 27290898 - 27290954
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagct 514  Q
    |||||||||| |||||||||||||| |||||| |||||| |||||| ||||||||||    
T  27290898 ttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggatagct 27290954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 522
Target Start/End: Original strand, 36646349 - 36646443
Alignment:
Q  427 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||| ||| ||||| ||||||||||| | || ||| ||||||||||||||||||| | |||| ||| |||||||||  |||||||||||| ||||    
T  36646349 agactatttgggagagcttatggaaaccactt-atggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaa 36646443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 522
Target Start/End: Complemental strand, 37825210 - 37825131
Alignment:
Q  443 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||| |  |||||||||||||||||| |||||| || ||| |||||||| |||| ||||| |||| |||||||    
T  37825210 cttatggaaacgagcttatgacatgtccataagttgttttcaggttatttccataagctctccaggaaagctaataaaaa 37825131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 528
Target Start/End: Original strand, 40122749 - 40122820
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||| || ||||| |||||| |||||| |||||| |||| || ||||||||||||||||| |||||    
T  40122749 tttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaactt 40122820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 50952406 - 50952316
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaa 548  Q
    ||||||||||| ||||| ||||||| |||||| |||||||| |||| || ||||| |||| | || |||| || ||||| |||||||||||    
T  50952406 ttatgacatgttcataaactgttttaagcttatttccataagctctccaagatagtttattacaacaactatatagcttatatgaaaacaa 50952316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 13709819 - 13709884
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| ||||||||| |||||| || ||| ||| ||||||||| ||||||||||||| ||||    
T  13709819 tttatgacaagtccataagttgttttcagtttatttcaataaactctccaggatagcttatgaaaa 13709884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 24603717 - 24603773
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 482  Q
    ||||||||||| ||||||||||| ||||| | ||||||||||| ||||||||||||||    
T  24603717 tgagactgtttgggagaacttattgaaac-agtttatgacatgcccataagctgtttt 24603773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 503
Target Start/End: Complemental strand, 31010475 - 31010430
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  31010475 ttatgacatgtccataagctgttttcagcttaattccataagctct 31010430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 48048981 - 48049050
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaacttt 529  Q
    ||||||||||||||||||||||| |||||| |||||||| |||  || ||||||| || |||| ||||||    
T  48048981 atgacatgtccataagctgttttcagcttatttccataacctccccaagatagctaatgaaaacaacttt 48049050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 1360522 - 1360574
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcagga 509  Q
    ||||||||||||||||||||| |||| |||||| ||||| |||||||| ||||    
T  1360522 tttatgacatgtccataagctattttcagcttatttccacaaactctttagga 1360574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 30750073 - 30750025
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttca 506  Q
    ||||||||||||||||||||||||| || |||  |||||||||||||||    
T  30750073 ttatgacatgtccataagctgttttcagattagatccataaactcttca 30750025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 30923895 - 30923959
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| |||||||||||| |||||| ||| |||||||||  ||||||| |||| ||||    
T  30923895 ttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaa 30923959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 31403220 - 31403156
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||| ||||||||||||||||||| |||||| | |||| ||||||  |||||||||||| ||||    
T  31403220 ttatgtcatgtccataagctgttttcagcttattaccatgaactctctaggatagcttatcaaaa 31403156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 40608390 - 40608442
Alignment:
Q  470 cataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||| |||||||||||||||  ||| |||||||| |||||||||    
T  40608390 cataagctgttttcagcttacttccataagttctccaggatagtttataaaaa 40608442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 22214659 - 22214726
Alignment:
Q  461 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||||||||||||||| |||||| |||| |||  |||  |||||||||||| |||| |||||    
T  22214659 tgacatgtccataagctgttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaactt 22214726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 39311638 - 39311740
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| |||||||| ||||||||| ||||||||||| | ||||||| || |||| ||  | |||| | |||| ||||||||||||| ||| |||||||||     
T  39311638 cacttgtgagactattttggagagcttatggaaac-agtttatgatatttccacaaatttttttcatcttatttccataaactctccagtatagcttatg 39311736  T
Q  519 aaaa 522  Q
    ||||    
T  39311737 aaaa 39311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 42747745 - 42747804
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgaca-tgtccataagctgtttt 482  Q
    ||||||||||||| ||||||||||| |||||| ||||||||| |||  ||||||||||||    
T  42747745 gtgagactgtttttgagaacttatgaaaacaactttatgacattgtttataagctgtttt 42747804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 11039303 - 11039376
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    ||||||||||||   ||| |||||||||||| | |||||||||||||||||| |||||| ||||||  |||||||    
T  11039303 gtgagactgtttgaaagagcttatggaaaca-tattatgacatgtccataagttgttttcagcttatctccataa 11039376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 512
Target Start/End: Complemental strand, 36101641 - 36101587
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatag 512  Q
    ||||||||||| || |||||||||| |||||| || ||||| |||||||||||||    
T  36101641 ttatgacatgttcacaagctgttttcagcttattttcataagctcttcaggatag 36101587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 522
Target Start/End: Original strand, 24887269 - 24887344
Alignment:
Q  445 tatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||| ||||||||||  ||| ||||||| |||||| | |||||| |||| ||||||||||||| ||||    
T  24887269 tatggaaacaattt-atgacatgtcattaa-ctgttttcagcttattcccataagctctccaggatagcttatgaaaa 24887344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 528
Target Start/End: Complemental strand, 237464 - 237400
Alignment:
Q  464 catgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||||||||| |||||| |||| ||| ||||  |||||| ||||| |||| |||||    
T  237464 catgtccataagctgttttcagcttatttccgtaagctctataggataacttatgaaaacaactt 237400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 1217797 - 1217861
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| |||||| | ||||||| |||||  |||  |||||||||||| ||||    
T  1217797 ttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaa 1217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 9279323 - 9279387
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||| ||||||  |||||||||||| |||||| |||| ||||||||||| ||||| |||| ||||    
T  9279323 ttataacatgtatataagctgttttcagcttatttccttaaactcttcatgatagtttatgaaaa 9279387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 24785278 - 24785214
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||| |||||| |||||| |||||| || ||||| ||||  |||||||||||| ||||    
T  24785278 ttatgacatgttcataagttgtttttagcttatttacataagctctcgaggatagcttatgaaaa 24785214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 41724301 - 41724254
Alignment:
Q  441 aacttatggaaacaattttatgacatgtccataagctgttttgagctta 489  Q
    ||||||||||||||| || |||||||||||||||| |||||| ||||||    
T  41724301 aacttatggaaacaactt-atgacatgtccataagttgttttcagctta 41724254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 503
Target Start/End: Complemental strand, 43115167 - 43115084
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    |||| |||||| ||||| | |||  |||||||||||| || |||||||||||||||  |||||| |||||| |||||||| ||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaactt-atgacatgtccataacttgttttcagcttatttccataagctct 43115084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 45432936 - 45432988
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggat 510  Q
    ||||||||||| |||||| |||||| |||||| |||||||| |||| ||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctctacaggat 45432988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 48528629 - 48528565
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||| ||||||||||| | ||||| |||||| ||| ||||||||| ||| ||||||||| ||||    
T  48528629 ttatggcatgtccataaacagttttcagcttatttctataaactctccagaatagcttatgaaaa 48528565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 425 - 528
Target Start/End: Original strand, 7262483 - 7262585
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 524  Q
    |||||| |||||||||| |||||  |||||  ||| |||||||| ||||||||||||| | |||| ||||| || |||||||||||||||||| ||||||    
T  7262483 tgagacggttttggagagcttataaaaacagcttt-tgacatgttcataagctgttttcaccttatttccacaagctcttcaggatagcttatgaaaaga 7262581  T
Q  525 actt 528  Q
    ||||    
T  7262582 actt 7262585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 441 - 527
Target Start/End: Complemental strand, 3924713 - 3924628
Alignment:
Q  441 aacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 527  Q
    |||||||| ||||||||| |||| ||||  ||||| ||||||  ||||| |||||||||||||||||||||||||||||||| ||||    
T  3924713 aacttatgaaaacaattt-atgaaatgtttataagttgttttcggcttatttccataaactcttcaggatagcttataaaaacaact 3924628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 515
Target Start/End: Original strand, 28935840 - 28935930
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 515  Q
    |||||||||||| ||||| ||||| ||  || ||| |||||||||||||||| | |||| |||||| |||||||| ||||||||||||||||    
T  28935840 gtgagactgtttgggagagcttatagagtcagttt-atgacatgtccataagttttttttagcttatttccataagctcttcaggatagctt 28935930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 15579585 - 15579497
Alignment:
Q  427 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    ||||||||| ||||| ||| ||||||||| || |||||||||||||||| |||| | |||||| ||||||||||||  || |||||||||    
T  15579585 agactgtttgggagagcttgtggaaacaactt-atgacatgtccataagttgttctcagcttatttccataaactcaacatgatagctta 15579497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 10439792 - 10439705
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatag 512  Q
    |||||||| ||| ||||| |||||| ||||||  | ||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||||    
T  10439792 gtgagactatttgggagagcttatgaaaacaaact-atgacatgtccataatctgctttcagcttatttccataaactctccaggatag 10439705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 12477284 - 12477348
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| |||||| |||||| ||||||| ||||| || |||||||||| ||||    
T  12477284 ttatgacatgtccataagttgttttcagcttatttccatacactctccatgatagcttattaaaa 12477348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 27140551 - 27140487
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| |||||| |||||| || ||||| |||| || |||||||||||||||    
T  27140551 ttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaa 27140487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 35925763 - 35925704
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||| ||||||||||||| | |||| ||||||||||||| || ||||||||||    
T  35925763 ttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 26184821 - 26184768
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggata 511  Q
    ||||||||||||||||||||||||| || ||| |||||||| |||| |||||||    
T  26184821 ttatgacatgtccataagctgttttcagattatttccataagctctccaggata 26184768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 518
Target Start/End: Original strand, 28689421 - 28689509
Alignment:
Q  429 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||||||| ||||||||| |||||||  || |||||||||||||||| |||||| |||||| || ||||| || | || |||||||||||    
T  28689421 actgttttagagaacttacggaaacagctt-atgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttata 28689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 44422772 - 44422684
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 547  Q
    |||||||||||||||||||||  |  |||||| || ||||| |||| |||||||||||||||||| | | ||| ||||| ||||||||||    
T  44422772 ttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttataaaaatagc-ttatagcttatatgaaaaca 44422684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 3597278 - 3597338
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||||||||| ||||||||| |||| |||||| ||||||||||| |||  |||||||||||    
T  3597278 ttatgacatggccataagctattttcagcttatttccataaactgttcgtgatagcttata 3597338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 4549322 - 4549263
Alignment:
Q  438 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    |||||||| |||||||||||| |||||||||| ||||| |||||| |||||| ||||||||    
T  4549322 gagaacttttggaaacaattt-atgacatgtctataagttgttttcagcttatttccataa 4549263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 528
Target Start/End: Complemental strand, 30257758 - 30257686
Alignment:
Q  456 ttttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||| ||||||||||||| |||||| ||| |||| | || |||||||| |||| |||| |||||    
T  30257758 ttttatgacatgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaactt 30257686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 503
Target Start/End: Original strand, 31517699 - 31517782
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    |||| |||||||||||| |||||||||||  |||||| |  ||||||||| ||||||||||||| |||||| || ||||| ||||    
T  31517699 cacttgtgagactgtttgggagaacttatcaaaacaactc-atgacatgttcataagctgttttcagcttattttcataagctct 31517782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 556
Target Start/End: Original strand, 44031998 - 44032093
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 556  Q
    |||||||||||||||||| |||| |||| | |||||||| ||||||| |||| |||| | |||  | |||| ||||| ||||||||||| |||||||    
T  44031998 atgacatgtccataagctattttcagctaatttccataagctcttcaagataactta-agaaaatagtttatagcttatatgaaaacaatttgactt 44032093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 23373272 - 23373373
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| |||||| ||||| ||||| ||||| ||||||| || |||||||||||| |  ||||||| |||||| |||  ||| ||||||||||||||||||     
T  23373272 cacttgtgagattgtttgggagagcttatagaaacaactt-atgacatgtccacat-ctgttttcagcttatttctgtaagctcttcaggatagcttatg 23373369  T
Q  519 aaaa 522  Q
    ||||    
T  23373370 aaaa 23373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 37593681 - 37593740
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||| ||||||||||||| |||||| || ||||| |||||||  |||||||||    
T  37593681 ttatgacatgttcataagctgttttcagcttattttcataagctcttcaaaatagcttat 37593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 29007680 - 29007753
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    |||||||||||||||| | ||| ||||||||| ||||||| |||| |||||| |||||| |||||| ||| ||||    
T  29007680 gtgagactgttttggatagcttttggaaacaa-tttatgatatgttcataagttgttttcagcttatttcgataa 29007753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 453
Target Start/End: Complemental strand, 567660 - 567631
Alignment:
Q  424 gtgagactgttttggagaacttatggaaac 453  Q
    ||||||||||||||||||||||||||||||    
T  567660 gtgagactgttttggagaacttatggaaac 567631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 527
Target Start/End: Original strand, 4699612 - 4699681
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 527  Q
    ||||||||||| ||||||||||||| |||||| ||| |||| |||| | |||||| |||| |||| ||||    
T  4699612 ttatgacatgttcataagctgtttttagcttatttctataagctctccgggatagtttatgaaaataact 4699681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 11639413 - 11639458
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||||||||||||||| |||||| || ||||| ||||    
T  11639413 ttatgacatgtccataagctgtttttagcttattttcataagctct 11639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 454
Target Start/End: Original strand, 36495452 - 36495481
Alignment:
Q  425 tgagactgttttggagaacttatggaaaca 454  Q
    ||||||||||||||||||||||||||||||    
T  36495452 tgagactgttttggagaacttatggaaaca 36495481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 506
Target Start/End: Complemental strand, 52286744 - 52286703
Alignment:
Q  465 atgtccataagctgttttgagcttacttccataaactcttca 506  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  52286744 atgtccataagctatttttagcttatttccataaactcttca 52286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 6231815 - 6231871
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    ||||||||||||||| ||||||| |||||| ||| ||||  |||||||| |||||||    
T  6231815 atgacatgtccataaactgttttcagcttatttctataagttcttcaggttagctta 6231871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 517
Target Start/End: Original strand, 16981932 - 16981992
Alignment:
Q  457 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||||||||||| |||||| |||||| ||  |||| |||| || ||||||||||    
T  16981932 tttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagcttat 16981992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 17628686 - 17628635
Alignment:
Q  443 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttcca 495  Q
    ||||||||||||| || ||||||||||||||||||||||| ||| || |||||    
T  17628686 cttatggaaacaactt-atgacatgtccataagctgttttcagcatatttcca 17628635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 522
Target Start/End: Original strand, 33723340 - 33723443
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| ||||||||| || ||| ||||||||||||| |  | ||||||||| ||| || |||||| |||||| |||||||| || | |||| ||||||||    
T  33723340 acacttgtgagactgcttgggaaaacttatggaaac-agctcatgacatgttcatgagatgttttcagcttatttccataagctttacagggtagcttat 33723438  T
Q  518 aaaaa 522  Q
     ||||    
T  33723439 gaaaa 33723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 35017649 - 35017585
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||| | |||| | |||| |||||||| |||| ||||| ||||||| ||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaa 35017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 35080066 - 35080122
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagct 514  Q
    ||||||||||| |||||||||||||||||||| ||| | || |||| || |||||||    
T  35080066 ttatgacatgttcataagctgttttgagcttatttcgacaagctctccatgatagct 35080122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 528
Target Start/End: Original strand, 39347970 - 39348034
Alignment:
Q  464 catgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||||| |||||| |||||| |||||||| || | |||||||| |||| |||| |||||    
T  39347970 catgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaactt 39348034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 503
Target Start/End: Original strand, 40485732 - 40485815
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    |||| |||||||||||| ||||||||||| ||||| || ||||||||||| || ||  || ||| |||| |||||||||| ||||    
T  40485732 cacttgtgagactgtttgggagaacttattgaaac-atcttatgacatgtgcagaatttgctttcagctaacttccataagctct 40485815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 51730596 - 51730525
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttact 491  Q
    |||||||||||||||| |||||| ||||||||||| |  ||||||||| | ||||||  ||||| ||||||||    
T  51730596 cactagtgagactgttgtggagagcttatggaaac-accttatgacattttcataagtagttttcagcttact 51730525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 503
Target Start/End: Original strand, 27237851 - 27237935
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    |||||||||| ||||||| | ||||||||| ||||||  || ||||||||| ||||||||||||| |||||| |||||||||||||    
T  27237851 acactagtgaaactgtttggtagaacttatagaaacagctt-atgacatgtacataagctgtttttagcttatttccataaactct 27237935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 35485990 - 35485920
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||| |||| ||||||||||||| |||| | |||||||  ||||||||||||||||||||||| |||||    
T  35485990 ttatgatatgttcataagctgttttcagctcatttccataggctcttcaggatagcttataaaaacaactt 35485920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 43141944 - 43141847
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 556  Q
    |||||||||| ||||||| |||||| |  ||| ||||||||||||||||||||||||||| |||| | | ||| ||||| |||| |||||| |||||||    
T  43141944 ttatgacatgcccataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatc-ttatagcttatatggaaacaatttgactt 43141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 522
Target Start/End: Original strand, 1741997 - 1742093
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||| ||| ||||| ||||||||||||| || ||||||||| |||||||| | || | |||| |||||||||||||||| ||||| |||| ||||    
T  1741997 tgagactatttgggagagcttatggaaacaactt-atgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaa 1742093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 1939329 - 1939393
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||||||||||||| | |||| |||||||| |||| ||| ||||||||| ||||    
T  1939329 ttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaa 1939393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 31228795 - 31228894
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||| |||||||||||| ||||  |||||  ||||||||| |||||||||  |||||||||||| || ||| ||||||||||||| || |||| |||||    
T  31228795 acacttgtgagactgtttgggagtgcttattcaaacaattt-atgacatgtatataagctgtttttaggttatttccataaactctccatgataacttat 31228893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 32821882 - 32821818
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||||||||||||| || ||| ||| |||| ||||| |||||||||||| ||||    
T  32821882 ttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaa 32821818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 34652033 - 34652097
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||||||||||||| | |||| |||||||| |||| || |||||||||| ||||    
T  34652033 ttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 459 - 522
Target Start/End: Original strand, 9530726 - 9530789
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||||| | |||| ||||||||| ||||| |||| ||||||||||||| ||||    
T  9530726 tatgacatgtccataagttatttttagcttactttcataagctctccaggatagcttatgaaaa 9530789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 9478372 - 9478314
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    |||| |||||||||||||||||||| | ||||||||||| |||||| || |||||||||    
T  9478372 ttattacatgtccataagctgttttcatcttacttccatcaactctccacgatagctta 9478314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 528
Target Start/End: Original strand, 16785326 - 16785415
Alignment:
Q  438 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||| |||||||||||| ||| |||| | ||| |||||||||||| || |||  |||||||||||||||||||| ||||| |||| |||||    
T  16785326 gagatcttatggaaacagttt-atgagaagtctataagctgttttcagattatctccataaactcttcaggatatcttatgaaaacaactt 16785415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 787443 - 787363
Alignment:
Q  419 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaac 500  Q
    |||| |||| |||||||  ||||||||||| |||||  || ||||||||||||||||||||||| ||||||  |||||||||    
T  787443 cacttgtgacactgtttgtgagaacttatgaaaacagctt-atgacatgtccataagctgttttcagcttatctccataaac 787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 1810737 - 1810668
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 527  Q
    |||||||| ||| |||| || |||| |||||| || ||||||||||||| ||||||||||||||| ||||    
T  1810737 ttatgacaggtcaataaacttttttcagcttattttcataaactcttcaagatagcttataaaaacaact 1810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 10563556 - 10563625
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||||||||| |||| |||||| || | ||| |||||||| ||||||||| |||| |||||    
T  10563556 tatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaactt 10563625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 498
Target Start/End: Complemental strand, 11063592 - 11063521
Alignment:
Q  426 gagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    |||||||||| | ||| |||||||||||| | |||||||||||||||||| |||||| |||||| || |||||    
T  11063592 gagactgtttggaagagcttatggaaaca-tattatgacatgtccataagttgtttttagcttattttcataa 11063521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 517
Target Start/End: Complemental strand, 33192306 - 33192216
Alignment:
Q  425 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||| | |||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||  |  |||| |||| |||||||||||||    
T  33192306 tgagactgttt-gaagaacttatgaaaacagttt-atgacatatccataagctgttttcagcttatatttataagctctccaggatagcttat 33192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 503
Target Start/End: Original strand, 41041986 - 41042064
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||  ||||| |||| ||||||| || || |||||||||| ||||||||| | |||| |||||||||||||    
T  41041986 gtgagactgtttcagagaatttatagaaacaactt-attacatgtccatcagctgttttcaacttatttccataaactct 41042064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 1160669 - 1160727
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 517  Q
    ||||||||||||||||| |||||| || ||| |||||||| || |||||||| ||||||    
T  1160669 tatgacatgtccataagttgtttttagtttatttccataagctgttcaggattgcttat 1160727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 10198479 - 10198541
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| ||||||||||| | |||||| |||||||| ||||  ||||||| |||||||||    
T  10198479 atgacatgttcataagctgttgtcagcttatttccataatctctctaggatagattataaaaa 10198541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 15120283 - 15120198
Alignment:
Q  430 ctgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    |||||| ||||| ||||||||||||| || ||||||||| ||| ||||||||| |||||| ||  |||| |||| || |||||||||    
T  15120283 ctgtttgggagagcttatggaaacaactt-atgacatgttcattagctgttttaagcttattttgataagctctccatgatagctta 15120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 42381741 - 42381672
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||| | ||||||||||| |||||| || ||||| || |||||||||||||||| ||| |||||    
T  42381741 ttatgacatgttcttaagctgtttttagctta-tttcataagcttttcaggatagcttatagaaataactt 42381672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 42817387 - 42817437
Alignment:
Q  472 taagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||| |||||| ||||||||||||||| |||||||| ||||||||| ||||    
T  42817387 taagttgtttttagcttacttccataagctcttcagaatagcttatgaaaa 42817437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 518
Target Start/End: Complemental strand, 3973605 - 3973548
Alignment:
Q  461 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    |||| ||||||||| ||||||| |||||| ||||||||||||   |||||||||||||    
T  3973605 tgacgtgtccataacctgttttcagcttatttccataaactccctaggatagcttata 3973548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 14316109 - 14316173
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctta 489  Q
    |||||||| ||||||||| |||||||||||||  ||||||||| |  |||||||||||| ||||||    
T  14316109 gtgagactattttggagagcttatggaaacaa-cttatgacatatgtataagctgttttcagctta 14316173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 28803494 - 28803546
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagct 477  Q
    ||||||||||||  |||||| |||||||||||  ||||||||||||||||||||    
T  28803494 gtgagactgtttgagagaacatatggaaacaa-cttatgacatgtccataagct 28803546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 522
Target Start/End: Complemental strand, 41817269 - 41817177
Alignment:
Q  429 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||| |||||| ||||| ||||| | |||||||||||  ||||  |||||| |||||| |||||||| |||| |||||||| |||| ||||    
T  41817269 actgtttaggagaatttatgaaaaca-tcttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaaa 41817177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 1741530 - 1741574
Alignment:
Q  477 tgttttgagcttacttccataaactcttcaggatagcttataaaa 521  Q
    |||||| |||||| |||||||||||||||||||||  ||||||||    
T  1741530 tgttttcagcttatttccataaactcttcaggataaattataaaa 1741574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 10285933 - 10285893
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    ||||||||||||||||||||||||| | |||| ||||||||    
T  10285933 ttatgacatgtccataagctgttttcaacttatttccataa 10285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 12215880 - 12215816
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||||||||||||| | | || | |||||| ||||  ||||| |||||||||||    
T  12215880 ttatgacatgtccataagctgttttcaccatattcccataagctctcaaggatggcttataaaaa 12215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 39962268 - 39962315
Alignment:
Q  429 actgttttggagaacttatggaaacaattttatgacatgtccataagct 477  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||||||||    
T  39962268 actgtttgggagagcttatagaaacaattt-atgacatgtccataagct 39962315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 41144283 - 41144219
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| ||||| |||||| |||||| ||||| ||||||| || | |||||||| ||||    
T  41144283 ttatgacatgtcaataagttgtttttagcttatttccagaaactctccaagttagcttatgaaaa 41144219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 530
Target Start/End: Original strand, 43065447 - 43065519
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaacttta 530  Q
    |||||||||||||||||  |||||| |||||| ||| |||| |||| || |||| ||||| |||| |||||||    
T  43065447 ttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaacttta 43065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 43985282 - 43985218
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||||||||||| |||| | |||  |||||||| ||||||| | ||||||| |||||    
T  43985282 ttatgacatgtccataagcttttttcaacttgtttccataagctcttcacggtagcttacaaaaa 43985218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 44458335 - 44458395
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 518  Q
    ||||||||| |||||||| |||||| |||||| ||  ||||||||| || |||||||||||    
T  44458335 ttatgacatatccataagttgtttttagcttatttatataaactctccatgatagcttata 44458395  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 24363601 - 24363668
Alignment:
Q  461 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||||||||||| |||| |||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaactt 24363668  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 424 - 522
Target Start/End: Complemental strand, 4966262 - 4966165
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| ||||| ||||| ||||| | || |||| ||||||||||| |||||| || ||| |||||||| ||||||||||| |||||| ||||    
T  4966262 gtgagactgtttaggagagcttatagaaaccactt-atgatatgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaa 4966165  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 48157084 - 48157157
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 498  Q
    |||||||||||| ||||| ||||| ||||||| || ||| ||||||||||||||||||| |||||| ||||||||    
T  48157084 gtgagactgtttgggagagcttatagaaacaactt-atgccatgtccataagctgttttcagcttatttccataa 48157157  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 528
Target Start/End: Original strand, 44151475 - 44151547
Alignment:
Q  456 ttttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||||||||||||| |||||| |||||| |||||||| || |||| ||||| |||| |||| |||||    
T  44151475 ttttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaactt 44151547  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 503
Target Start/End: Original strand, 27496406 - 27496449
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||||||||||||| |||||| |||||||||||||    
T  27496406 atgacatgtccataagctgttttcagcttatttccataaactct 27496449  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 503
Target Start/End: Original strand, 27503064 - 27503107
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||||||||||||| |||||| |||||||||||||    
T  27503064 atgacatgtccataagctgttttcagcttatttccataaactct 27503107  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 39334299 - 39334209
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 515  Q
    |||||||||||| | |||  ||||||||||||||| |||||||||||||||| ||  || |||||| |||||||| |||  |||||||||||    
T  39334299 gtgagactgtttggtagagtttatggaaacaattt-atgacatgtccataagttgcattcagcttatttccataagctcgccaggatagctt 39334209  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 522
Target Start/End: Original strand, 9423578 - 9423655
Alignment:
Q  444 ttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||||||||| ||||||||| |||||| |||||| |||||| ||| | || |||| ||||||||||||| ||||    
T  9423578 ttatggaaacaattt-atgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttattaaaa 9423655  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 27626120 - 27626178
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    ||||||||||||||||| ||||||| | |||| |||||||| ||||||| |||||||||    
T  27626120 ttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagctta 27626178  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 27517853 - 27517898
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||    
T  27517853 ttatgacatgtccataagcagttttcagcttatttccataaactct 27517898  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 33894699 - 33894642
Alignment:
Q  459 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 516  Q
    ||||||||||||||||| |||||| |||||| ||| ||||||| | ||||||||||||    
T  33894699 tatgacatgtccataagttgttttcagcttatttcaataaactttccaggatagctta 33894642  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 12234886 - 12234950
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||||||||||| |||||||||||| |||||| |||||||| ||||  |||| |||| |||||||    
T  12234886 ttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagctcataaaaa 12234950  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 28520979 - 28521038
Alignment:
Q  427 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagct 487  Q
    |||||| || ||||||||||||||||||| || |||||||||| |||||||||||| ||||    
T  28520979 agactgcttaggagaacttatggaaacaactt-atgacatgtctataagctgttttcagct 28521038  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 29574583 - 29574638
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataa 474  Q
    ||||| |||||||||||| ||||||||||||||||| |  |||||||||||||||||    
T  29574583 acacttgtgagactgtttcggagaacttatggaaac-agcttatgacatgtccataa 29574638  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 515
Target Start/End: Complemental strand, 39345577 - 39345487
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 515  Q
    |||||||||||| | |||  | ||||||||| ||| |||||||||||||||| || ||| |||||| ||||||||  || ||||||||||||    
T  39345577 gtgagactgtttggtagagttcatggaaacagttt-atgacatgtccataagttgctttcagcttatttccataaggtcgtcaggatagctt 39345487  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 36538020 - 36537951
Alignment:
Q  418 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctt 488  Q
    ||||| |||||| |||||  ||||||||||||||||||  ||||||||||| |||||| |||||| |||||    
T  36538020 acacttgtgagattgtttgagagaacttatggaaacaa-cttatgacatgttcataagttgtttttagctt 36537951  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 40439119 - 40439057
Alignment:
Q  466 tgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||| |||||||||||| | |||| |||||||| ||||||||||||||| || |||| |||||    
T  40439119 tgtctataagctgtttttaacttatttccataagctcttcaggatagctaatgaaaacaactt 40439057  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 36598320 - 36598384
Alignment:
Q  424 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctta 489  Q
    |||||| |||||  |||| |||||||||||| | ||||||||||| ||||||||||||| ||||||    
T  36598320 gtgagattgtttgagagagcttatggaaaca-tcttatgacatgttcataagctgttttcagctta 36598384  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 6552289 - 6552353
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    ||||||||| | ||||||||||||| |||||| || |||||||||| || ||||| |||| ||||    
T  6552289 ttatgacatattcataagctgttttcagcttattttcataaactctgcatgatagtttatgaaaa 6552353  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 30535667 - 30535612
Alignment:
Q  426 gagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 482  Q
    ||||||||||||||||||||||| ||||||  |||||| |||| | |||||||||||    
T  30535667 gagactgttttggagaacttatgaaaacaa-cttatgatatgttcgtaagctgtttt 30535612  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 33645939 - 33646021
Alignment:
Q  438 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 522  Q
    |||| ||||||||||||| || |||||||||| ||||| |||||| || ||| |||||||| |||| || |||||||||| ||||    
T  33645939 gagagcttatggaaacaactt-atgacatgtctataagttgtttttaggttatttccataagctctcca-gatagcttatgaaaa 33646021  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 306399 - 306329
Alignment:
Q  458 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 528  Q
    |||||||||| |||||||||||||| ||||||||| ||||| ||||  |||||||||||| |||| |||||    
T  306399 ttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 12682 - 12746
Alignment:
Q  438 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 503  Q
    |||| ||||||||||||| || |||||||||||||||| |||||| ||||||  ||||||| ||||    
T  12682 gagaccttatggaaacaactt-atgacatgtccataagttgttttcagcttagctccataagctct 12746  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 500
Target Start/End: Original strand, 10616 - 10656
Alignment:
Q  460 atgacatgtccataagctgttttgagcttacttccataaac 500  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  10616 atgacatgtccataagttgttttcagcttatttccataaac 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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