View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_6 (Length: 563)
Name: NF11938_low_6
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 39 - 377
Target Start/End: Original strand, 46999189 - 46999528
Alignment:
| Q |
39 |
aacaggggaataccaatgttaaggaggtgtcacgaaatggtgaaccaacaaaatcttcatggaaaccatcacatgagaatgagaatgtgtggaatcagca |
138 |
Q |
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| T |
46999189 |
aacaggggaataccaatgttaaggaggtgtcacgaaatggtgaaccaacaaaatcttcatggaaaccatcacatgagaatgagaatgtgtggaatcagca |
46999288 |
T |
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| Q |
139 |
ttgtgtgagaaggacacgtggcggttatatttacgggtgtaggaaggaacgtttgaatgatattagttggaaaattgtgcctctgtgacagagattggat |
238 |
Q |
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| T |
46999289 |
ttgtgtgagaaggacacgtggcggttatatttactggcgtaggaaggaacgtttgaatgatattagttggaaaattgtgcctctgtgacagagattggat |
46999388 |
T |
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| Q |
239 |
gcatgcggtgttg-ttggaaaacaatgaaggtaacacaaattatggagccaaaaaacaacatgcaatgcaacaaaaagaaagagcggcatggtggtgaag |
337 |
Q |
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| T |
46999389 |
gcatgcggtgttgtttggaaaacaatgacagtaacacaaattatggagccaaaaaacaacatgcaatgcaacaaaaagaaagagcggcatggtggtgaag |
46999488 |
T |
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| Q |
338 |
gttatatgtgagcaagagatattttgagagtttcctactg |
377 |
Q |
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| T |
46999489 |
gttatatgtgagcaagagatattttgagagtttcctactg |
46999528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 401 - 523
Target Start/End: Original strand, 46999553 - 46999675
Alignment:
| Q |
401 |
accaaattttgaaaagtattgttatattagagagaagacaaaaattgaacatataggctttgttcccttctgttaatttcccttttacaattcaagttcc |
500 |
Q |
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| T |
46999553 |
accaaattttgaaaagtattgttatattagagagaagagaaaaattgaacatataggctttgttcccttttgttaatttcccttttacaattcaagttcc |
46999652 |
T |
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| Q |
501 |
ctctagggtttgtctcttgtaaa |
523 |
Q |
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| T |
46999653 |
ctctagggtttgtctcttgtaaa |
46999675 |
T |
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Back To:
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