View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_8 (Length: 538)
Name: NF11938_low_8
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 31421084 - 31420718
Alignment:
| Q |
25 |
agcaagacaaactaagaagaatgatatgataattaatcacgtaattcaaatgatttatgtactaacaatta----aaaatagcataattatattgatgca |
120 |
Q |
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| T |
31421084 |
agcaagacaaactaagaagaatgatatgataat----cacgtaattcaaatgatttatgcactaataattagttaaaaattgcataattatattgatgca |
31420989 |
T |
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| Q |
121 |
cttcattagttttctttttgttgctaatatcaacttgattggttaaaaatgacgtaattgatgttctaattcattagcaaaaaatgctacgatatcggta |
220 |
Q |
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| T |
31420988 |
cttcattagttttctttttgttgctaatatgcacttgattggttaaaaattacgtaattgatgttctaattcattagcaaaaaatgctactatatcggta |
31420889 |
T |
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| Q |
221 |
ctcaattaatgcatcctcaatttcgactctaagaatttttctttttaaatcagatcctttgaaatcaaaatattagacatatttaaggatggagtgaatc |
320 |
Q |
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| T |
31420888 |
ctcaattaatgcatcctcaattttcattgtaagaatttttctttttaaatcagatcctttgaaatcaaaatattagacatatttaaggatggagtgaatc |
31420789 |
T |
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| Q |
321 |
aattattagattacgaaagaaatgggaaaataaaattaattgtaaaaacataataagaatacagtctaaat |
391 |
Q |
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| T |
31420788 |
aattattagattgcgaaagaaatgggagaataaaattaattgtaaaaacataataagaatacagtctaaat |
31420718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 31420699 - 31420659
Alignment:
| Q |
391 |
tctctggtgacgaattctgcaccccaaacatagccactatg |
431 |
Q |
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| T |
31420699 |
tctctggtgacgaattctccaccccaagcatagccactatg |
31420659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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