View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11938_low_9 (Length: 529)
Name: NF11938_low_9
Description: NF11938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11938_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Original strand, 48254163 - 48254658
Alignment:
| Q |
12 |
tagcataggttataagcttgcttgcagcttctgtagcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttt |
111 |
Q |
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| T |
48254163 |
tagcataggttataagcttgcttgcagcttctgtggcatgaatcccatcccaactcacatagttgtaagggtcatcacatgctgttgctgtcactctttt |
48254262 |
T |
|
| Q |
112 |
tccatttatctcctttgtatttccacaatacactttaggatcgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254263 |
tccatttatctcctttgtatttccacaatacactttaggattgaagttgtattcacctccaccatatccacaacatgcttttgtaccatattgaagacct |
48254362 |
T |
|
| Q |
212 |
gtttcatgtaagaaacnnnnnnncatttaagggatcattacgattaacaatgttcttttaaaacaagccaagagataagtgtttgaaccatgagaagtag |
311 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48254363 |
gtttcatgtaacaaacaaaaaaacatttaagggatcattacgattaacaatgttcttttaaaacaagccaaaagataagtgtttgaaccatgagaagtag |
48254462 |
T |
|
| Q |
312 |
gatgccggaaaagctccaacagaacggtgtaggtatcgacatatatgacagaagcatctgagagactttctctggtttgtttcaatgactctttcaacat |
411 |
Q |
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| T |
48254463 |
gatgccggaaaagctccaacagaacggtgtaggtatcgacatatatgacagaagcatctgagatactttctctggtttgtttcaatgactctttcaacat |
48254562 |
T |
|
| Q |
412 |
tttgttatagtccactactgcattgttgtaagaaaccatgcatccaaattcgtcaaggtccgaactattatgaggaagttctactaagaatgaagg |
507 |
Q |
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| T |
48254563 |
tttgttatagtccactactgcattgttgtaagaaaccatgcatccaaattcgtcaaggtccgaactattatgaggaagttctactaagaatgaagg |
48254658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 489
Target Start/End: Complemental strand, 10499723 - 10499596
Alignment:
| Q |
362 |
gaagcatctgagagactttctctggtttgtttcaatgactctttcaacattttgttatagtccactactgcattgttgtaagaaaccatgcatccaaatt |
461 |
Q |
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||||||||||| | ||||| ||| ||||| |||||| ||||||||||| |||||| || || |||| |||||||| |||| || ||||||||| || |
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| T |
10499723 |
gaagcatctgataaactttttctagtttgagtcaatgtctctttcaacaatttgttgtaatcatctacagcattgttataagtaattatgcatccatgtt |
10499624 |
T |
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| Q |
462 |
cgtcaaggtccgaactattatgaggaag |
489 |
Q |
| |
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| || | ||| |||||| |||||||||| |
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| T |
10499623 |
catctaagtcagaactagtatgaggaag |
10499596 |
T |
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